Functional heterogeneity of embryonic stem cells revealed through translational amplification of an early endodermal transcript von Canham, Maurice A, Sharov, Alexei A, Ko, Minoru S H, Brickman, Joshua M

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SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation von Matsumoto, Hirotaka, Kiryu, Hisanori, Furusawa, Chikara, Ko, Minoru S H, Ko, Shigeru B H, Gouda, Norio, Hayashi, Tetsutaro, Nikaido, Itoshi

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Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells von Masui, Shinji, Nakatake, Yuhki, Toyooka, Yayoi, Shimosato, Daisuke, Yagi, Rika, Takahashi, Kazue, Okochi, Hitoshi, Okuda, Akihiko, Matoba, Ryo, Sharov, Alexei A., Ko, Minoru S. H., Niwa, Hitoshi

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MEIOSIN Directs the Switch from Mitosis to Meiosis in Mammalian Germ Cells von Ishiguro, Kei-ichiro, Matsuura, Kumi, Tani, Naoki, Takeda, Naoki, Usuki, Shingo, Yamane, Mariko, Sugimoto, Michihiko, Fujimura, Sayoko, Hosokawa, Mihoko, Chuma, Shinichiro, Ko, Minoru S.H., Araki, Kimi, Niwa, Hitoshi

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Mouse B-Type Lamins Are Required for Proper Organogenesis But Not by Embryonic Stem Cells von Kim, Youngjo, Sharov, Alexei A., McDole, Katie, Cheng, Melody, Hao, Haiping, Fan, Chen-Ming, Gaiano, Nicholas, Ko, Minoru S. H., Zheng, Yixian

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Zscan4 regulates telomere elongation and genomic stability in ES cells von Zalzman, Michal, Falco, Geppino, Sharova, Lioudmila V., Nishiyama, Akira, Thomas, Marshall, Lee, Sung-Lim, Stagg, Carole A., Hoang, Hien G., Yang, Hsih-Te, Indig, Fred E., Wersto, Robert P., Ko, Minoru S. H.

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Totipotent Embryonic Stem Cells Arise in Ground-State Culture Conditions von Morgani, Sophie M., Canham, Maurice A., Nichols, Jennifer, Sharov, Alexei A., Migueles, Rosa Portero, Ko, Minoru S.H., Brickman, Joshua M.

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Efficient differentiation of human pluripotent stem cells into skeletal muscle cells by combining RNA-based MYOD1-expression and POU5F1-silencing von Akiyama, Tomohiko, Sato, Saeko, Chikazawa-Nohtomi, Nana, Soma, Atsumi, Kimura, Hiromi, Wakabayashi, Shunichi, Ko, Shigeru B. H., Ko, Minoru S. H.

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AGEMAP: a gene expression database for aging in mice von Zahn, Jacob M, Poosala, Suresh, Owen, Art B, Ingram, Donald K, Lustig, Ana, Carter, Arnell, Weeraratna, Ashani T, Taub, Dennis D, Gorospe, Myriam, Mazan-Mamczarz, Krystyna, Lakatta, Edward G, Boheler, Kenneth R, Xu, Xiangru, Mattson, Mark P, Falco, Geppino, Ko, Minoru S H, Schlessinger, David, Firman, Jeffrey, Kummerfeld, Sarah K, Wood, 3rd, William H, Zonderman, Alan B, Kim, Stuart K, Becker, Kevin G

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Induction of human pluripotent stem cells into kidney tissues by synthetic mRNAs encoding transcription factors von Hiratsuka, Ken, Monkawa, Toshiaki, Akiyama, Tomohiko, Nakatake, Yuhki, Oda, Mayumi, Goparaju, Sravan Kumar, Kimura, Hiromi, Chikazawa-Nohtomi, Nana, Sato, Saeko, Ishiguro, Keiichiro, Yamaguchi, Shintaro, Suzuki, Sayuri, Morizane, Ryuji, Ko, Shigeru B. H., Itoh, Hiroshi, Ko, Minoru S. H.

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Prenatal arsenic exposure alters gene expression in the adult liver to a proinflammatory state contributing to accelerated atherosclerosis von States, J Christopher, Singh, Amar V, Knudsen, Thomas B, Rouchka, Eric C, Ngalame, Ntube O, Arteel, Gavin E, Piao, Yulan, Ko, Minoru S H

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Dissecting Oct3/4-regulated gene networks in embryonic stem cells by expression profiling von Matoba, Ryo, Niwa, Hitoshi, Masui, Shinji, Ohtsuka, Satoshi, Carter, Mark G, Sharov, Alexei A, Ko, Minoru S H

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Loss of Imprinting of Igf2 Alters Intestinal Maturation and Tumorigenesis in Mice von Sakatani, Takashi, Kaneda, Atsushi, Iacobuzio-Donahue, Christine A, Carter, Mark G, de Boom Witzel, Sten, Okano, Hideyuki, Ko, Minoru S. H, Ohlsson, Rolf, Longo, Dan L, Feinberg, Andrew P

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Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immu... von Sharov, Alexei A, Masui, Shinji, Sharova, Lioudmila V, Piao, Yulan, Aiba, Kazuhiro, Matoba, Ryo, Xin, Li, Niwa, Hitoshi, Ko, Minoru S H

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Database for mRNA Half-Life of 19 977 Genes Obtained by DNA Microarray Analysis of Pluripotent and Differentiating Mouse Embryonic Stem Cells von Sharova, Lioudmila V., Sharov, Alexei A., Nedorezov, Timur, Piao, Yulan, Shaik, Nabeebi, Ko, Minoru S.H.

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ZSCAN4-binding motif-TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes von Akiyama, Tomohiko, Ishiguro, Kei-Ichiro, Chikazawa, Nana, Ko, Shigeru B H, Yukawa, Masashi, Ko, Minoru S H

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Top3β is an RNA topoisomerase that works with fragile X syndrome protein to promote synapse formation von Xu, Dongyi, Shen, Weiping, Guo, Rong, Xue, Yutong, Peng, Wei, Sima, Jian, Yang, Jay, Sharov, Alexei, Srikantan, Subramanya, Yang, Jiandong, Fox, David, Qian, Yong, Martindale, Jennifer L, Piao, Yulan, Machamer, James, Joshi, Samit R, Mohanty, Subhasis, Shaw, Albert C, Lloyd, Thomas E, Brown, Grant W, Ko, Minoru S H, Gorospe, Myriam, Zou, Sige, Wang, Weidong

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Essential role of chromatin remodeling protein Bptf in early mouse embryos and embryonic stem cells von Landry, Joseph, Sharov, Alexei A, Piao, Yulan, Sharova, Lioudmila V, Xiao, Hua, Southon, Eileen, Matta, Jennifer, Tessarollo, Lino, Zhang, Ying E, Ko, Minoru S H, Kuehn, Michael R, Yamaguchi, Terry P, Wu, Carl

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Uncovering Early Response of Gene Regulatory Networks in ESCs by Systematic Induction of Transcription Factors von Nishiyama, Akira, Xin, Li, Sharov, Alexei A., Thomas, Marshall, Mowrer, Gregory, Meyers, Emily, Piao, Yulan, Mehta, Samir, Yee, Sarah, Nakatake, Yuhki, Stagg, Carole, Sharova, Lioudmila, Correa-Cerro, Lina S., Bassey, Uwem, Hoang, Hien, Kim, Eugene, Tapnio, Richard, Qian, Yong, Dudekula, Dawood, Zalzman, Michal, Li, Manxiang, Falco, Geppino, Yang, Hsih-Te, Lee, Sung-Lim, Monti, Manuela, Stanghellini, Ilaria, Islam, Md. Nurul, Nagaraja, Ramaiah, Goldberg, Ilya, Wang, Weidong, Longo, Dan L., Schlessinger, David, Ko, Minoru S.H.

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SOX9 accelerates ESC differentiation to three germ layer lineages by repressing SOX2 expression through P21 (WAF1/CIP1) von Yamamizu, Kohei, Schlessinger, David, Ko, Minoru S H

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