Tracking Distinct RNA Populations Using Efficient and Reversible Covalent Chemistry von Duffy, Erin E., Rutenberg-Schoenberg, Michael, Stark, Catherine D., Kitchen, Robert R., Gerstein, Mark B., Simon, Matthew D.

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exceRpt: A Comprehensive Analytic Platform for Extracellular RNA Profiling von Rozowsky, Joel, Kitchen, Robert R., Park, Jonathan J., Galeev, Timur R., Diao, James, Warrell, Jonathan, Thistlethwaite, William, Subramanian, Sai L., Milosavljevic, Aleksandar, Gerstein, Mark

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A comprehensive catalog of predicted functional upstream open reading frames in humans von McGillivray, Patrick, Ault, Russell, Pawashe, Mayur, Kitchen, Robert, Balasubramanian, Suganthi, Gerstein, Mark

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Molecular and cellular reorganization of neural circuits in the human lineage von Sousa, André M. M., Zhu, Ying, Raghanti, Mary Ann, Kitchen, Robert R., Onorati, Marco, Tebbenkamp, Andrew T. N., Stutz, Bernardo, Meyer, Kyle A., Li, Mingfeng, Kawasawa, Yuka Imamura, Liu, Fuchen, Perez, Raquel Garcia, Mele, Marta, Carvalho, Tiago, Skarica, Mario, Gulden, Forrest O., Pletikos, Mihovil, Shibata, Akemi, Stephenson, Alexa R., Edler, Melissa K., Ely, John J., Elsworth, John D., Horvath, Tamas L., Hof, Patrick R., Hyde, Thomas M., Kleinman, Joel E., Weinberger, Daniel R., Reimers, Mark, Lifton, Richard P., Mane, Shrikant M., Noonan, James P., State, Matthew W., Lein, Ed S., Knowles, James A., Marques-Bonet, Tomas, Sherwood, Chet C., Gerstein, Mark B., Sestan, Nenad

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Exercise hormone irisin is a critical regulator of cognitive function von Islam, Mohammad R., Valaris, Sophia, Young, Michael F., Haley, Erin B., Luo, Renhao, Bond, Sabrina F., Mazuera, Sofia, Kitchen, Robert R., Caldarone, Barbara J., Bettio, Luis E. B., Christie, Brian R., Schmider, Angela B., Soberman, Roy J., Besnard, Antoine, Jedrychowski, Mark P., Kim, Hyeonwoo, Tu, Hua, Kim, Eunhee, Choi, Se Hoon, Tanzi, Rudolph E., Spiegelman, Bruce M., Wrann, Christiane D.

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The PsychENCODE project von Akbarian, Schahram, Liu, Chunyu, Knowles, James A, Vaccarino, Flora M, Farnham, Peggy J, Crawford, Gregory E, Jaffe, Andrew E, Pinto, Dalila, Dracheva, Stella, Geschwind, Daniel H, Mill, Jonathan, Nairn, Angus C, Abyzov, Alexej, Pochareddy, Sirisha, Prabhakar, Shyam, Weissman, Sherman, Sullivan, Patrick F, State, Matthew W, Weng, Zhiping, Peters, Mette A, White, Kevin P, Gerstein, Mark B, Amiri, Anahita, Armoskus, Chris, Ashley-Koch, Allison E, Bae, Taejeong, Beckel-Mitchener, Andrea, Berman, Benjamin P, Coetzee, Gerhard A, Coppola, Gianfilippo, Francoeur, Nancy, Fromer, Menachem, Gao, Robert, Grennan, Kay, Herstein, Jennifer, Kavanagh, David H, Ivanov, Nikolay A, Jiang, Yan, Kitchen, Robert R, Kozlenkov, Alexey, Kundakovic, Marija, Li, Mingfeng, Li, Zhen, Liu, Shuang, Mangravite, Lara M, Mattei, Eugenio, Markenscoff-Papadimitriou, Eirene, Navarro, Fábio C P, North, Nicole, Omberg, Larsson, Panchision, David, Parikshak, Neelroop, Poschmann, Jeremie, Price, Amanda J, Purcaro, Michael, Reddy, Timothy E, Roussos, Panos, Schreiner, Shannon, Scuderi, Soraya, Sebra, Robert, Shibata, Mikihito, Shieh, Annie W, Skarica, Mario, Sun, Wenjie, Swarup, Vivek, Thomas, Amber, Tsuji, Junko, van Bakel, Harm, Wang, Daifeng, Wang, Yongjun, Wang, Kai, Werling, Donna M, Willsey, A Jeremy, Witt, Heather, Won, Hyejung, Wong, Chloe C Y, Wray, Gregory A, Wu, Emily Y, Xu, Xuming, Yao, Lijing, Senthil, Geetha, Lehner, Thomas, Sklar, Pamela, Sestan, Nenad

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exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids von Murillo, Oscar D., Thistlethwaite, William, Rozowsky, Joel, Subramanian, Sai Lakshmi, Lucero, Rocco, Shah, Neethu, Jackson, Andrew R., Srinivasan, Srimeenakshi, Chung, Allen, Laurent, Clara D., Kitchen, Robert R., Galeev, Timur, Warrell, Jonathan, Diao, James A., Welsh, Joshua A., Hanspers, Kristina, Riutta, Anders, Burgstaller-Muehlbacher, Sebastian, Shah, Ravi V., Yeri, Ashish, Jenkins, Lisa M., Ahsen, Mehmet E., Cordon-Cardo, Carlos, Dogra, Navneet, Gifford, Stacey M., Smith, Joshua T., Stolovitzky, Gustavo, Tewari, Ashutosh K., Wunsch, Benjamin H., Yadav, Kamlesh K., Danielson, Kirsty M., Filant, Justyna, Moeller, Courtney, Nejad, Parham, Paul, Anu, Simonson, Bridget, Wong, David K., Zhang, Xuan, Balaj, Leonora, Gandhi, Roopali, Sood, Anil K., Alexander, Roger P., Wang, Liang, Wu, Chunlei, Wong, David T.W., Galas, David J., Van Keuren-Jensen, Kendall, Patel, Tushar, Jones, Jennifer C., Das, Saumya, Cheung, Kei-Hoi, Pico, Alexander R., Su, Andrew I., Raffai, Robert L., Laurent, Louise C., Roth, Matthew E., Gerstein, Mark B., Milosavljevic, Aleksandar

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Data-driven identification of predictive risk biomarkers for subgroups of osteoarthritis using interpretable machine learning von Nielsen, Rikke Linnemann, Monfeuga, Thomas, Kitchen, Robert R., Egerod, Line, Leal, Luis G., Schreyer, August Thomas Hjortshøj, Gade, Frederik Steensgaard, Sun, Carol, Helenius, Marianne, Simonsen, Lotte, Willert, Marianne, Tahrani, Abd A., McVey, Zahra, Gupta, Ramneek

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A multiregional proteomic survey of the postnatal human brain von Carlyle, Becky C., Kitchen, Robert R., Kanyo, Jean E., Voss, Edward Z., Pletikos, Mihovil, Sousa, André M. M., Lam, TuKiet T., Gerstein, Mark B., Sestan, Nenad, Nairn, Angus C.

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Decoding neuroproteomics: integrating the genome, translatome and functional anatomy von Kitchen, Robert R, Rozowsky, Joel S, Gerstein, Mark B, Nairn, Angus C

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Diverse human extracellular RNAs are widely detected in human plasma von Freedman, Jane E., Gerstein, Mark, Mick, Eric, Rozowsky, Joel, Levy, Daniel, Kitchen, Robert, Das, Saumya, Shah, Ravi, Danielson, Kirsty, Beaulieu, Lea, Navarro, Fabio C. P., Wang, Yaoyu, Galeev, Timur R., Holman, Alex, Kwong, Raymond Y., Murthy, Venkatesh, Tanriverdi, Selim E., Koupenova, Milka, Mikhalev, Ekaterina, Tanriverdi, Kahraman

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Synaptic proteins associated with cognitive performance and neuropathology in older humans revealed by multiplexed fractionated proteomics von Carlyle, Becky C., Kandigian, Savannah E., Kreuzer, Johannes, Das, Sudeshna, Trombetta, Bianca A., Kuo, Yikai, Bennett, David A., Schneider, Julie A., Petyuk, Vladislav A., Kitchen, Robert R., Morris, Robert, Nairn, Angus C., Hyman, Bradley T., Haas, Wilhelm, Arnold, Steven E.

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Comparative analysis of the transcriptome across distant species von Gerstein, Mark B., Rozowsky, Joel, Yan, Koon-Kiu, Wang, Daifeng, Cheng, Chao, Brown, James B., Davis, Carrie A., Hillier, LaDeana, Sisu, Cristina, Li, Jingyi Jessica, Pei, Baikang, Harmanci, Arif O., Duff, Michael O., Djebali, Sarah, Alexander, Roger P., Alver, Burak H., Auerbach, Raymond, Bell, Kimberly, Bickel, Peter J., Boeck, Max E., Boley, Nathan P., Booth, Benjamin W., Cherbas, Lucy, Cherbas, Peter, Di, Chao, Dobin, Alex, Drenkow, Jorg, Ewing, Brent, Fang, Gang, Fastuca, Megan, Feingold, Elise A., Frankish, Adam, Gao, Guanjun, Good, Peter J., Guigó, Roderic, Hammonds, Ann, Harrow, Jen, Hoskins, Roger A., Howald, Cédric, Hu, Long, Huang, Haiyan, Hubbard, Tim J. P., Huynh, Chau, Jha, Sonali, Kasper, Dionna, Kato, Masaomi, Kaufman, Thomas C., Kitchen, Robert R., Ladewig, Erik, Lagarde, Julien, Lai, Eric, Leng, Jing, Lu, Zhi, MacCoss, Michael, May, Gemma, McWhirter, Rebecca, Merrihew, Gennifer, Miller, David M., Mortazavi, Ali, Murad, Rabi, Oliver, Brian, Olson, Sara, Park, Peter J., Pazin, Michael J., Perrimon, Norbert, Pervouchine, Dmitri, Reinke, Valerie, Reymond, Alexandre, Robinson, Garrett, Samsonova, Anastasia, Saunders, Gary I., Schlesinger, Felix, Sethi, Anurag, Slack, Frank J., Spencer, William C., Stoiber, Marcus H., Strasbourger, Pnina, Tanzer, Andrea, Thompson, Owen A., Wan, Kenneth H., Wang, Guilin, Wang, Huaien, Watkins, Kathie L., Wen, Jiayu, Wen, Kejia, Xue, Chenghai, Yang, Li, Yip, Kevin, Zaleski, Chris, Zhang, Yan, Zheng, Henry, Brenner, Steven E., Graveley, Brenton R., Celniker, Susan E., Gingeras, Thomas R., Waterston, Robert

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The Dynamic Platelet Transcriptome in Obesity and Weight Loss von Ezzaty Mirhashemi, Marzieh, Shah, Ravi V., Kitchen, Robert R., Rong, Jian, Spahillari, Aferdita, Pico, Alexander R., Vitseva, Olga, Levy, Daniel, Demarco, Danielle, Shah, Sajani, Iafrati, Mark D., Larson, Martin G., Tanriverdi, Kahraman, Freedman, Jane E.

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Evaluation of serological lateral flow assays for severe acute respiratory syndrome coronavirus-2 von Trombetta, Bianca A, Kandigian, Savannah E, Kitchen, Robert R, Grauwet, Korneel, Webb, Pia Kivisäkk, Miller, Glenn A, Jennings, Charles G, Jain, Sejal, Miller, Samara, Kuo, Yikai, Sweeney, Thadryan, Gilboa, Tal, Norman, Maia, Simmons, Daimon P, Ramirez, Christopher E, Bedard, Melissa, Fink, Catherine, Ko, Jina, De León Peralta, Esmarline J, Watts, Gerald, Gomez-Rivas, Emma, Davis, Vannessa, Barilla, Rocky M, Wang, Jianing, Cunin, Pierre, Bates, Samuel, Morrison-Smith, Chevaun, Nicholson, Benjamin, Wong, Edmond, El-Mufti, Leena, Kann, Michael, Bolling, Anna, Fortin, Brooke, Ventresca, Hayden, Zhou, Wen, Pardo, Santiago, Kwock, Megan, Hazra, Aditi, Cheng, Leo, Ahmad, Q. Rushdy, Toombs, James A, Larson, Rebecca, Pleskow, Haley, Luo, Nell Meosky, Samaha, Christina, Pandya, Unnati M, De Silva, Pushpamali, Zhou, Sally, Ganhadeiro, Zakary, Yohannes, Sara, Gay, Rakeisha, Slavik, Jacqueline, Mukerji, Shibani S, Jarolim, Petr, Walt, David R, Carlyle, Becky C, Ritterhouse, Lauren L, Suliman, Sara

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A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals von Chen, Jieming, Rozowsky, Joel, Galeev, Timur R., Harmanci, Arif, Kitchen, Robert, Bedford, Jason, Abyzov, Alexej, Kong, Yong, Regan, Lynne, Gerstein, Mark

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Statistical aspects of quantitative real-time PCR experiment design von Kitchen, Robert R., Kubista, Mikael, Tichopad, Ales

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Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns von Sproul, Duncan, Kitchen, Robert R, Nestor, Colm E, Dixon, J Michael, Sims, Andrew H, Harrison, David J, Ramsahoye, Bernard H, Meehan, Richard R

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Stroke and Circulating Extracellular RNAs von Mick, Eric, Shah, Ravi, Tanriverdi, Kahraman, Murthy, Venkatesh, Gerstein, Mark, Rozowsky, Joel, Kitchen, Robert, Larson, Martin G, Levy, Daniel, Freedman, Jane E

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Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers von Li, Xiaotong, Kumar, Sushant, Harmanci, Arif, Li, Shantao, Kitchen, Robert R, Zhang, Yan, Wali, Vikram B, Reddy, Sangeetha M, Woodward, Wendy A, Reuben, James M, Rozowsky, Joel, Hatzis, Christos, Ueno, Naoto T, Krishnamurthy, Savitri, Pusztai, Lajos, Gerstein, Mark

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