Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways von King, Zachary A, Dräger, Andreas, Ebrahim, Ali, Sonnenschein, Nikolaus, Lewis, Nathan E, Palsson, Bernhard O

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COBRAme: A computational framework for genome-scale models of metabolism and gene expression von Lloyd, Colton J, Ebrahim, Ali, Yang, Laurence, King, Zachary A, Catoiu, Edward, O'Brien, Edward J, Liu, Joanne K, Palsson, Bernhard O

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Constraint-based models predict metabolic and associated cellular functions von Bordbar, Aarash, Monk, Jonathan M., King, Zachary A., Palsson, Bernhard O.

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The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function von Ghatak, Sankha, King, Zachary A, Sastry, Anand, Palsson, Bernhard O

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The Escherichia coli transcriptome mostly consists of independently regulated modules von Sastry, Anand V., Gao, Ye, Szubin, Richard, Hefner, Ying, Xu, Sibei, Kim, Donghyuk, Choudhary, Kumari Sonal, Yang, Laurence, King, Zachary A., Palsson, Bernhard O.

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BiGG Models: A platform for integrating, standardizing and sharing genome-scale models von King, Zachary A, Lu, Justin, Dräger, Andreas, Miller, Philip, Federowicz, Stephen, Lerman, Joshua A, Ebrahim, Ali, Palsson, Bernhard O, Lewis, Nathan E

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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data von Lachance, Jean-Christophe, Lloyd, Colton J, Monk, Jonathan M, Yang, Laurence, Sastry, Anand V, Seif, Yara, Palsson, Bernhard O, Rodrigue, Sébastien, Feist, Adam M, King, Zachary A, Jacques, Pierre-Étienne

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Next-generation genome-scale models for metabolic engineering von King, Zachary A, Lloyd, Colton J, Feist, Adam M, Palsson, Bernhard O

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Adult perioperative cardiac arrest: An overview of 684 cases reported to webAIRS von Bright, Matthew R, Endlich, Yasmin, King, Zachary DJ, White, Leigh D, Concha Blamey, Sandra I, Culwick, Martin D

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Escher-Trace: a web application for pathway-based visualization of stable isotope tracing data von Kumar, Avi, Mitchener, Jack, King, Zachary A, Metallo, Christian M

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Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism von Cheng, Chuankai, O'Brien, Edward J, McCloskey, Douglas, Utrilla, Jose, Olson, Connor, LaCroix, Ryan A, Sandberg, Troy E, Feist, Adam M, Palsson, Bernhard O, King, Zachary A

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Modeling the multi-scale mechanisms of macromolecular resource allocation von Yang, Laurence, Yurkovich, James T, King, Zachary A, Palsson, Bernhard O

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Escher-FBA: a web application for interactive flux balance analysis von Rowe, Elliot, Palsson, Bernhard O, King, Zachary A

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Enzyme promiscuity shapes adaptation to novel growth substrates von Guzmán, Gabriela I, Sandberg, Troy E, LaCroix, Ryan A, Nyerges, Ákos, Papp, Henrietta, de Raad, Markus, King, Zachary A, Hefner, Ying, Northen, Trent R, Notebaart, Richard A, Pál, Csaba, Palsson, Bernhard O, Papp, Balázs, Feist, Adam M

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Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity von Phaneuf, Patrick V, Yurkovich, James T, Heckmann, David, Wu, Muyao, Sandberg, Troy E, King, Zachary A, Tan, Justin, Palsson, Bernhard O, Feist, Adam M

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economic and technical evaluation of microalgal biofuels von Stephens, Evan, Ross, Ian L, King, Zachary, Mussgnug, Jan H, Kruse, Olaf, Posten, Clemens, Borowitzka, Michael A, Hankamer, Ben

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The genetic basis for adaptation of model-designed syntrophic co-cultures von Lloyd, Colton J, King, Zachary A, Sandberg, Troy E, Hefner, Ying, Olson, Connor A, Phaneuf, Patrick V, O'Brien, Edward J, Sanders, Jon G, Salido, Rodolfo A, Sanders, Karenina, Brennan, Caitriona, Humphrey, Gregory, Knight, Rob, Feist, Adam M

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Visualizing metabolic network dynamics through time-series metabolomic data von Buchweitz, Lea F, Yurkovich, James T, Blessing, Christoph, Kohler, Veronika, Schwarzkopf, Fabian, King, Zachary A, Yang, Laurence, Jóhannsson, Freyr, Sigurjónsson, Ólafur E, Rolfsson, Óttar, Heinrich, Julian, Dräger, Andreas

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Genome‐scale metabolic modeling reveals key features of a minimal gene set von Lachance, Jean‐Christophe, Matteau, Dominick, Brodeur, Joëlle, Lloyd, Colton J, Mih, Nathan, King, Zachary A, Knight, Thomas F, Feist, Adam M, Monk, Jonathan M, Palsson, Bernhard O, Jacques, Pierre‐Étienne, Rodrigue, Sébastien

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Discovery of a seventh Rpp soybean rust resistance locus in soybean accession PI 605823 von Childs, Silas P., King, Zachary R., Walker, David R., Harris, Donna K., Pedley, Kerry F., Buck, James W., Boerma, H. Roger, Li, Zenglu

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