Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon von Broadhurst, Mara Jana, Ardeshir, Amir, Kanwar, Bittoo, Mirpuri, Julie, Gundra, Uma Mahesh, Leung, Jacqueline M, Wiens, Kirsten E, Vujkovic-Cvijin, Ivan, Kim, Charlie C, Yarovinsky, Felix, Lerche, Nicholas W, McCune, Joseph M, Loke, P'ng

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Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages von Gautier, Emmanuel L, Shay, Tal, Miller, Jennifer, Greter, Melanie, Jakubzick, Claudia, Ivanov, Stoyan, Helft, Julie, Chow, Andrew, Elpek, Kutlu G, Gordonov, Simon, Mazloom, Amin R, Ma'ayan, Avi, Chua, Wei-Jen, Hansen, Ted H, Turley, Shannon J, Merad, Miriam, Randolph, Gwendalyn J

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The transcriptional landscape of αβ T cell differentiation von Mingueneau, Michael, Kreslavsky, Taras, Gray, Daniel, Heng, Tracy, Cruse, Richard, Ericson, Jeffrey, Bendall, Sean, Spitzer, Matthew H, Nolan, Garry P, Kobayashi, Koichi, von Boehmer, Harald, Mathis, Diane, Benoist, Christophe

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Molecular definition of the identity and activation of natural killer cells von Bezman, Natalie A, Kim, Charles C, Sun, Joseph C, Min-Oo, Gundula, Hendricks, Deborah W, Kamimura, Yosuke, Best, J Adam, Goldrath, Ananda W, Lanier, Lewis L

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Transcriptional insights into the CD8+ T cell response to infection and memory T cell formation von Best, J Adam, Blair, David A, Knell, Jamie, Yang, Edward, Mayya, Viveka, Doedens, Andrew, Dustin, Michael L, Goldrath, Ananda W

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Identification of transcriptional regulators in the mouse immune system von Jojic, Vladimir, Shay, Tal, Sylvia, Katelyn, Zuk, Or, Sun, Xin, Kang, Joonsoo, Regev, Aviv, Koller, Daphne

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Shared and distinct transcriptional programs underlie the hybrid nature of iNKT cells von Cohen, Nadia R, Brennan, Patrick J, Shay, Tal, Watts, Gerald F, Brigl, Manfred, Kang, Joonsoo, Brenner, Michael B

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A genomics-informed computational biology platform prospectively predicts treatment responses in AML and MDS patients von Drusbosky, Leylah M., Singh, Neeraj Kumar, Hawkins, Kimberly E., Salan, Cesia, Turcotte, Madeleine, Wise, Elizabeth A., Meacham, Amy, Vijay, Vindhya, Anderson, Glenda G., Kim, Charlie C., Radhakrishnan, Saumya, Ullal, Yashaswini, Talawdekar, Anay, Sikora, Huzaifa, Nair, Prashant, Khanna-Gupta, Arati, Abbasi, Taher, Vali, Shireen, Guha, Subharup, Farhadfar, Nosha, Murthy, Hemant S., Horn, Biljana N., Leather, Helen L., Castillo, Paul, Tucker, Caitlin, Cline, Christina, Pettiford, Leslie, Lamba, Jatinder K., Moreb, Jan S., Brown, Randy A., Norkin, Maxim, Hiemenz, John W., Hsu, Jack W., Slayton, William B., Wingard, John R., Cogle, Christopher R.

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Deciphering the transcriptional network of the dendritic cell lineage von Miller, Jennifer C, Brown, Brian D, Shay, Tal, Gautier, Emmanuel L, Jojic, Vladimir, Cohain, Ariella, Pandey, Gaurav, Leboeuf, Marylene, Elpek, Kutlu G, Helft, Julie, Hashimoto, Daigo, Chow, Andrew, Price, Jeremy, Greter, Melanie, Bogunovic, Milena, Bellemare-Pelletier, Angelique, Frenette, Paul S, Randolph, Gwendalyn J, Turley, Shannon J, Merad, Miriam

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Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks von Malhotra, Deepali, Fletcher, Anne L, Astarita, Jillian, Lukacs-Kornek, Veronika, Tayalia, Prakriti, Gonzalez, Santiago F, Elpek, Kutlu G, Chang, Sook Kyung, Knoblich, Konstantin, Hemler, Martin E, Brenner, Michael B, Carroll, Michael C, Mooney, David J, Turley, Shannon J

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Abstract 5093: Clinical-grade NGS analytic platform with explicit negative calling to improve variant reporting across different laboratory protocols: Accuracy study von Tang, Edward P., Kim, Charlie C., Mechem, Kristine C., Anderson, Glenda G.

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Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes von Narayan, Kavitha, Sylvia, Katelyn E, Malhotra, Nidhi, Yin, Catherine C, Martens, Gregory, Vallerskog, Therese, Kornfeld, Hardy, Xiong, Na, Cohen, Nadia R, Brenner, Michael B, Berg, Leslie J, Kang, Joonsoo

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Intrathymic programming of effector fates in three molecularly distinct gamma delta T cell subtypes von Narayan, Kavitha, Sylvia, Katelyn E, Malhotra, Nidhi, Yin, Catherine C, Martens, Gregory, Vallerskog, Therese, Kornfeld, Hardy, Xiong, Na, Cohen, Nadia R, Brenner, Michael B, Berg, Leslie J, Kang, Joonsoo, Zhou, Yan, Shinton, Susan A, Hardy, Richard R, Bezman, Natalie A, Sun, Joseph C, Kim, Charlie C, Lanier, Lewis L, Miller, Jennifer, Brown, Brian, Merad, Miriam, Fletcher, Anne, Elpek, Kutlu, Bellemare-Pelletier, Angelique, Malhotra, Deepali, Turley, Shannon, Sylvia, Katelyn, Gazit, Roi, Garrison, Brian, Rossi, Derrick J, Jojic, Vladimir, Koller, Daphne, Jianu, Radu, Laidlaw, David, Costello, James, Collins, Jim, Cohen, Nadia, Brennan, Patrick, Brenner, Michael, Shay, Tal, Regev, Aviv, Kim, Francis, Rao, Tata Nageswara, Wagers, Amy, Gautier, Emmanuel L, Jakubzick, Claudia, Randolph, Gwendalyn J

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Gene expression during the generation and activation of mouse neutrophils: implication of novel functional and regulatory pathways von Ericson, Jeffrey A, Duffau, Pierre, Yasuda, Kei, Ortiz-Lopez, Adriana, Rothamel, Katherine, Rifkin, Ian R, Monach, Paul A

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Differential splicing across immune system lineages von Ergun, Ayla, Doran, Graeme, Costello, James C., Paik, Henry H., Collins, James J., Mathis, Diane, Benoist, Christophe, Consortium, ImmGen

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Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains von Mostafavi, Sara, Ortiz-Lopez, Adriana, Bogue, Molly A, Hattori, Kimie, Pop, Cristina, Koller, Daphne, Mathis, Diane, Benoist, Christophe

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The transcriptional landscape of alpha beta T cell differentiation von Mingueneau, Michael, Kreslavsky, Taras, Gray, Daniel, Heng, Tracy, Cruse, Richard, Ericson, Jeffrey, Bendall, Sean, Spitzer, Matthew H, Nolan, Garry P, Kobayashi, Koichi, von Boehmer, Harald, Mathis, Diane, Benoist, Christophe, Best, Adam J, Knell, Jamie, Goldrath, Ananda, Jojic, Vladimir, Koller, Daphne, Shay, Tal, Regev, Aviv, Cohen, Nadia, Brennan, Patrick, Brenner, Michael, Kim, Francis, Rao, Tata Nageswara, Wagers, Amy, Rothamel, Katherine, Ortiz-Lopez, Adriana, Bezman, Natalie A, Sun, Joseph C, Min-Oo, Gundula, Kim, Charlie C, Lanier, Lewis L, Miller, Jennifer, Brown, Brian, Merad, Miriam, Gautier, Emmanuel L, Jakubzick, Claudia, Randolph, Gwendalyn J, Monach, Paul, Blair, David A, Dustin, Michael L, Shinton, Susan A, Hardy, Richard R, Laidlaw, David, Collins, Jim, et. al

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Transcriptional insights into the CD8 super(+) T cell response to infection and memory T cell formation von Best, J Adam, Blair, David A, Knell, Jamie, Yang, Edward, Mayya, Viveka, Doedens, Andrew, Dustin, Michael L, Goldrath, Ananda W, Monach, Paul, Shinton, Susan A, Hardy, Richard R, Jianu, Radu, Koller, David, Collins, Jim, Gazit, Roi, Garrison, Brian S, Rossi, Derrick J, Narayan, Kavitha, Sylvia, Katelyn, Kang, Joonsoo, Fletcher, Anne, Elpek, Kutlu, Bellemare-Pelletier, Angelique, Malhotra, Deepali, Turley, Shannon, Jojic, Vladimir, Koller, Daphne, Shay, Tal, Regev, Aviv, Cohen, Nadia, Brennan, Patrick, Brenner, Michael, Kreslavsky, Taras, Bezman, Natalie A, Sun, Joseph C, Kim, Charlie C, Lanier, Lewis L, Miller, Jennifer, Brown, Brian, Merad, Miriam, Gautier, Emmanuel L, Jakubzick, Claudia, Randolph, Gwendalyn J, Kim, Francis, Rao, Tata Nageswara, Wagers, Amy, Heng, Tracy, et. al

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The transcriptional landscape of [alpha][beta] T cell differentiation von Mingueneau, Michael, Kreslavsky, Taras, Gray, Daniel, Heng, Tracy, Cruse, Richard, Ericson, Jeffrey, Bendall, Sean, Spitzer, Matthew H, Nolan, Garry P, Kobayashi, Koichi, Von Boehmer, Harald, Mathis, Diane, Benoist, Christophe, Best, Adam J, Knell, Jamie, Goldrath, Ananda, Jojic, Vladimir, Koller, Daphne, Shay, Tal, Regev, Aviv, Cohen, Nadia, Brennan, Patrick, Brenner, Michael, Kim, Francis, Rao, Tata Nageswara, Wagers, Amy, Rothamel, Katherine, Ortiz-lopez, Adriana, Bezman, Natalie A, Sun, Joseph C, Min-oo, Gundula, Kim, Charlie C, Lanier, Lewis L, Miller, Jennifer, Brown, Brian, Merad, Miriam, Gautier, Emmanuel L, Jakubzick, Claudia, Randolph, Gwendalyn J, Monach, Paul, Blair, David A, Dustin, Michael L, Shinton, Susan A, Hardy, Richard R, Laidlaw, David, Collins, Jim, Gazit, Roi, Rossi, Derrick J, Malhotra, Nidhi, Sylvia, Katelyn, Kang, Joonsoo, Fletcher, Anne, Elpek, Kutlu, Bellemare-pelletier, Angelique, Malhotra, Deepali, Turley, Shannon

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Intrathymic programming of effector fates in three molecularly distinct [gamma][delta] T cell subtypes von Narayan, Kavitha, Sylvia, Katelyn E, Malhotra, Nidhi, Yin, Catherine C, Martens, Gregory, Vallerskog, Therese, Kornfeld, Hardy, Xiong, Na, Cohen, Nadia R, Brenner, Michael B, Berg, Leslie J, Kang, Joonsoo, Zhou, Yan, Shinton, Susan A, Hardy, Richard R, Bezman, Natalie A, Sun, Joseph C, Kim, Charlie C, Lanier, Lewis L, Miller, Jennifer, Brown, Brian, Merad, Miriam, Fletcher, Anne, Elpek, Kutlu, Bellemare-pelletier, Angelique, Malhotra, Deepali, Turley, Shannon, Sylvia, Katelyn, Gazit, Roi, Garrison, Brian, Rossi, Derrick J, Jojic, Vladimir, Koller, Daphne, Jianu, Radu, Laidlaw, David, Costello, James, Collins, Jim, Cohen, Nadia, Brennan, Patrick, Brenner, Michael, Shay, Tal, Regev, Aviv, Kim, Francis, Rao, Tata Nageswara, Wagers, Amy, Gautier, Emmanuel L, Jakubzick, Claudia, Randolph, Gwendalyn J, Monach, Paul, Best, Adam J, Knell, Jamie, Goldrath, Ananda, Heng, Tracy, Kreslavsky, Taras, Painter, Michio, Mathis, Diane, Benoist, Christophe

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