Overflow Metabolism in Escherichia coli during Steady-State Growth: Transcriptional Regulation and Effect of the Redox Ratio von VEMURI, G. N, ALTMAN, E, SANGURDEKAR, D. P, KHODURSKY, A. B, EITEMAN, M. A

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Topoisomerase IV is a Target of Quinolones in Escherichia coli von Khodursky, Arkady B., Zechiedrich, E. Lynn, Cozzarelli, Nicholas R.

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Nitrogen Regulatory Protein C-Controlled Genes of Escherichia coli: Scavenging as a Defense against Nitrogen Limitation von Zimmer, D P, Soupene, E, Lee, H L, Wendisch, V F, Khodursky, A B, Peter, B J, Bender, R A, Kustu, S

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Roles of Topoisomerases in Maintaining Steady-state DNA Supercoiling in Escherichia coli von Zechiedrich, E.Lynn, Khodursky, Arkady B., Bachellier, Sophie, Schneider, Robert, Chen, Dongrong, Lilley, David M.J., Cozzarelli, Nicholas R.

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DNA Microarray Analysis of Gene Expression in Response to Physiological and Genetic Changes That Affect Tryptophan Metabolism in Escherichia coli von Khodursky, Arkady B., Peter, Brian J., Cozzarelli, Nicholas R., Botstein, David, Brown, Patrick O., Yanofsky, Charles

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Analysis of Topoisomerase Function in Bacterial Replication Fork Movement: Use of DNA Microarrays von Khodursky, Arkady B., Peter, Brian J., Schmid, Molly B., DeRisi, Joseph, Botstein, David, Brown, Patrick O., Cozzarelli, Nicholas R.

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The Mechanism of Inhibition of Topoisomerase IV by Quinolone Antibacterials von Khodursky, Arkady B., Cozzarelli, Nicholas R.

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Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli von Zechiedrich, E L, Khodursky, A B, Cozzarelli, N R

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Mechanisms of separation of the complementary strands of DNA during replication von Alexandrov, A I, Cozzarelli, N R, Holmes, V F, Khodursky, A B, Peter, B J, Postow, L, Rybenkov, V, Vologodskii, A V

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Global Analysis of mRNA Decay and Abundance in Escherichia coli at Single-Gene Resolution Using Two-Color Fluorescent DNA Microarrays von Bernstein, Jonathan A., Khodursky, Arkady B., Lin, Pei-Hsun, Lin-Chao, Sue, Cohen, Stanley N.

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sgRNAcas9: a software package for designing CRISPR sgRNA and evaluating potential off-target cleavage sites von Xie, Shengsong, Shen, Bin, Zhang, Chaobao, Huang, Xingxu, Zhang, Yonglian

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A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data von Xie, Yang, Pan, Wei, Khodursky, Arkady B.

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Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium von Singer, Esther, Emerson, David, Webb, Eric A, Barco, Roman A, Kuenen, J Gijs, Nelson, William C, Chan, Clara S, Comolli, Luis R, Ferriera, Steve, Johnson, Justin, Heidelberg, John F, Edwards, Katrina J

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RecA can stimulate the relaxation activity of topoisomerase I: Molecular basis of topoisomerase-mediated genome-wide transcriptional responses in Escherichia coli von Reckinger, Amy R, Jeong, Kyeong Soo, Khodursky, Arkady B, Hiasa, Hiroshi

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The 3D organization of the yeast genome correlates with co-expression and reflects functional relations between genes von Homouz, Dirar, Kudlicki, Andrzej S

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Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli von Peter, Brian J, Arsuaga, Javier, Breier, Adam M, Khodursky, Arkady B, Brown, Patrick O, Cozzarelli, Nicholas R

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A molecular signature of proteinuria in glomerulonephritis von Reich, Heather N, Tritchler, David, Cattran, Daniel C, Herzenberg, Andrew M, Eichinger, Felix, Boucherot, Anissa, Henger, Anna, Berthier, Celine C, Nair, Viji, Cohen, Clemens D, Scholey, James W, Kretzler, Matthias

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Algebraic comparison of partial lists in bioinformatics von Jurman, Giuseppe, Riccadonna, Samantha, Visintainer, Roberto, Furlanello, Cesare

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Spatial patterns of transcriptional activity in the chromosome of Escherichia coli von Jeong, Kyeong Soo, Ahn, Jaeyong, Khodursky, Arkady B

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Transcriptomic signatures of ash (Fraxinus spp.) phloem von Bai, Xiaodong, Rivera-Vega, Loren, Mamidala, Praveen, Bonello, Pierluigi, Herms, Daniel A, Mittapalli, Omprakash

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