Intestinal microbiome analyses identify melanoma patients at risk for checkpoint-blockade-induced colitis von Dubin, Krista, Callahan, Margaret K., Ren, Boyu, Khanin, Raya, Viale, Agnes, Ling, Lilan, No, Daniel, Gobourne, Asia, Littmann, Eric, Huttenhower, Curtis, Pamer, Eric G., Wolchok, Jedd D.

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Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice von Ubeda, Carles, Lipuma, Lauren, Gobourne, Asia, Viale, Agnes, Leiner, Ingrid, Equinda, Michele, Khanin, Raya, Pamer, Eric G

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Modeling oncogenic signaling in colon tumors by multidirectional analyses of microarray data directed for maximization of analytical reliability von Skrzypczak, Magdalena, Goryca, Krzysztof, Rubel, Tymon, Paziewska, Agnieszka, Mikula, Michal, Jarosz, Dorota, Pachlewski, Jacek, Oledzki, Janusz, Ostrowski, Jerzy, Ostrowsk, Jerzy

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LDH-A regulates the tumor microenvironment via HIF-signaling and modulates the immune response von Serganova, Inna, Cohen, Ivan J, Vemuri, Kiranmayi, Shindo, Masahiro, Maeda, Masatomo, Mane, Mayuresh, Moroz, Ekaterina, Khanin, Raya, Satagopan, Jaya, Koutcher, Jason A, Blasberg, Ronald

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IDH mutation impairs histone demethylation and results in a block to cell differentiation von Lu, Chao, Ward, Patrick S., Kapoor, Gurpreet S., Rohle, Dan, Turcan, Sevin, Abdel-Wahab, Omar, Edwards, Christopher R., Khanin, Raya, Figueroa, Maria E., Melnick, Ari, Wellen, Kathryn E., O’Rourke, Donald M., Berger, Shelley L., Chan, Timothy A., Levine, Ross L., Mellinghoff, Ingo K., Thompson, Craig B.

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Variant callers for next-generation sequencing data: a comparison study von Liu, Xiangtao, Han, Shizhong, Wang, Zuoheng, Gelernter, Joel, Yang, Bao-Zhu

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Intestinal Microbiota and Relapse After Hematopoietic-Cell Transplantation von Peled, Jonathan U, Devlin, Sean M, Staffas, Anna, Lumish, Melissa, Khanin, Raya, Littmann, Eric R, Ling, Lilan, Kosuri, Satyajit, Maloy, Molly, Slingerland, John B, Ahr, Katya F, Porosnicu Rodriguez, Kori A, Shono, Yusuke, Slingerland, Ann E, Docampo, Melissa D, Sung, Anthony D, Weber, Daniela, Alousi, Amin M, Gyurkocza, Boglarka, Ponce, Doris M, Barker, Juliet N, Perales, Miguel-Angel, Giralt, Sergio A, Taur, Ying, Pamer, Eric G, Jenq, Robert R, van den Brink, Marcel R M

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Characteristics of networks of interventions: a description of a database of 186 published networks von Nikolakopoulou, Adriani, Chaimani, Anna, Veroniki, Areti Angeliki, Vasiliadis, Haris S, Schmid, Christopher H, Salanti, Georgia

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Periodontal disease and the oral microbiota in new-onset rheumatoid arthritis von Scher, Jose U., Ubeda, Carles, Equinda, Michele, Khanin, Raya, Buischi, Yvonne, Viale, Agnes, Lipuma, Lauren, Attur, Mukundan, Pillinger, Michael H., Weissmann, Gerald, Littman, Dan R., Pamer, Eric G., Bretz, Walter A., Abramson, Steven B.

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Modelling Competing Endogenous RNA Networks von Bosia, Carla, Pagnani, Andrea, Zecchina, Riccardo

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Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation von Jenq, Robert R, Ubeda, Carles, Taur, Ying, Menezes, Clarissa C, Khanin, Raya, Dudakov, Jarrod A, Liu, Chen, West, Mallory L, Singer, Natalie V, Equinda, Michele J, Gobourne, Asia, Lipuma, Lauren, Young, Lauren F, Smith, Odette M, Ghosh, Arnab, Hanash, Alan M, Goldberg, Jenna D, Aoyama, Kazutoshi, Blazar, Bruce R, Pamer, Eric G, van den Brink, Marcel R M

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Molecular Classification of Gastric Cancer: A New Paradigm von SHAH, Manish A, KHANIN, Raya, TANG, Laura, JANJIGIAN, Yelena Y, KLIMSTRA, David S, GERDES, Hans, KELSEN, David P

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Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases von Bauer-Mehren, Anna, Bundschus, Markus, Rautschka, Michael, Mayer, Miguel A, Sanz, Ferran, Furlong, Laura I

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Human microRNA oncogenes and tumor suppressors show significantly different biological patterns: from functions to targets von Wang, Dong, Qiu, Chengxiang, Zhang, Haijun, Wang, Juan, Cui, Qinghua, Yin, Yuxin

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Identification of KIF5B-RET and GOPC-ROS1 Fusions in Lung Adenocarcinomas through a Comprehensive mRNA-Based Screen for Tyrosine Kinase Fusions von SUEHARA, Yoshiyuki, ARCILA, Maria, KRIS, Mark G, ZAKOWSKI, Maureen F, RIZVI, Naiyer, KHANIN, Raya, LADANYI, Marc, LU WANG, HASANOVIC, Adnan, ANG, Daphne, ITO, Tatsuo, KIMURA, Yuki, DRILON, Alexander, GUHA, Udayan, RUSCH, Valerie

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Activation of STAT3 in human gastric cancer cells via interleukin (IL)-6-type cytokine signaling correlates with clinical implications von Wang, Zhengguang, Si, Xiulian, Xu, Aman, Meng, Xiangning, Gao, Shile, Qi, Yijun, Zhu, Liang, Li, Tuanjie, Li, Weiping, Dong, Liuyi

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Identification of a novel, recurrent HEY1-NCOA2 fusion in mesenchymal chondrosarcoma based on a genome-wide screen of exon-level expression data von Wang, Lu, Motoi, Toru, Khanin, Raya, Olshen, Adam, Mertens, Fredrik, Bridge, Julia, Cin, Paola Dal, Antonescu, Cristina R., Singer, Samuel, Hameed, Meera, Bovee, Judith V.M.G., Hogendoorn, Pancras C. W., Socci, Nicholas, Ladanyi, Marc

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Quantitative identification of mutant alleles derived from lung cancer in plasma cell-free DNA via anomaly detection using deep sequencing data von Kukita, Yoji, Uchida, Junji, Oba, Shigeyuki, Nishino, Kazumi, Kumagai, Toru, Taniguchi, Kazuya, Okuyama, Takako, Imamura, Fumio, Kato, Kikuya

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Dynamic Changes in Lung MicroRNA Profiles During the Development of Pulmonary Hypertension due to Chronic Hypoxia and Monocrotaline von Caruso, Paola, MacLean, Margaret R, Khanin, Raya, McClure, John, Soon, Elaine, Southgate, Mark, MacDonald, Robert A, Greig, Jenny A, Robertson, Keith E, Masson, Rachel, Denby, Laura, Dempsie, Yvonne, Long, Lu, Morrell, Nicholas W, Baker, Andrew H

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The coupling of the M2 muscarinic receptor to its G protein is voltage dependent von Ben-Chaim, Yair, Broide, Chava, Parnas, Hanna

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