The Contribution of Neanderthals to Phenotypic Variation in Modern Humans von Dannemann, Michael, Kelso, Janet

Volltext

High-throughput DNA sequencing - concepts and limitations von Kircher, Martin, Kelso, Janet

Volltext

PhenoScanner V2: an expanded tool for searching human genotype–phenotype associations von Kamat, Mihir A, Blackshaw, James A, Young, Robin, Surendran, Praveen, Burgess, Stephen, Danesh, John, Butterworth, Adam S, Staley, James R

Volltext

Nextstrain: real-time tracking of pathogen evolution von Hadfield, James, Megill, Colin, Bell, Sidney M, Huddleston, John, Potter, Barney, Callender, Charlton, Sagulenko, Pavel, Bedford, Trevor, Neher, Richard A

Volltext

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome von Ji, Yanrong, Zhou, Zhihan, Liu, Han, Davuluri, Ramana V

Volltext

Scaling tree-based automated machine learning to biomedical big data with a feature set selector von Le, Trang T, Fu, Weixuan, Moore, Jason H

Volltext

Limits of long-term selection against Neandertal introgression von Petr, Martin, Pääbo, Svante, Kelso, Janet, Vernot, Benjamin

Volltext

Phandango: an interactive viewer for bacterial population genomics von Hadfield, James, Croucher, Nicholas J, Goater, Richard J, Abudahab, Khalil, Aanensen, David M, Harris, Simon R

Volltext

GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks von Moerman, Thomas, Aibar Santos, Sara, Bravo González-Blas, Carmen, Simm, Jaak, Moreau, Yves, Aerts, Jan, Aerts, Stein

Volltext

VICTOR: genome-based phylogeny and classification of prokaryotic viruses von Meier-Kolthoff, Jan P, Göker, Markus

Volltext

leeHom: adaptor trimming and merging for Illumina sequencing reads von Renaud, Gabriel, Stenzel, Udo, Kelso, Janet

Volltext

Fast and sensitive taxonomic assignment to metagenomic contigs von Mirdita, M, Steinegger, M, Breitwieser, F, Söding, J, Levy Karin, E

Volltext

Prediction of lncRNA-disease associations based on inductive matrix completion von Lu, Chengqian, Yang, Mengyun, Luo, Feng, Wu, Fang-Xiang, Li, Min, Pan, Yi, Li, Yaohang, Wang, Jianxin

Volltext

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA von Renaud, Gabriel, Slon, Viviane, Duggan, Ana T, Kelso, Janet

Volltext

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods von Nascimento, Marta, Sousa, Adriano, Ramirez, Mário, Francisco, Alexandre P, Carriço, João A, Vaz, Cátia

Volltext

TissueEnrich: Tissue-specific gene enrichment analysis von Jain, Ashish, Tuteja, Geetu

Volltext

A learning-based framework for miRNA-disease association identification using neural networks von Peng, Jiajie, Hui, Weiwei, Li, Qianqian, Chen, Bolin, Hao, Jianye, Jiang, Qinghua, Shang, Xuequn, Wei, Zhongyu

Volltext

Variable selection and validation in multivariate modelling von Shi, Lin, Westerhuis, Johan A, Rosén, Johan, Landberg, Rikard, Brunius, Carl

Volltext

TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data von Wei, Lin, Jin, Zhilin, Yang, Shengjie, Xu, Yanxun, Zhu, Yitan, Ji, Yuan

Volltext

The genomic landscape of Neanderthal ancestry in present-day humans von Sankararaman, Sriram, Mallick, Swapan, Dannemann, Michael, Prüfer, Kay, Kelso, Janet, Pääbo, Svante, Patterson, Nick, Reich, David

Volltext