The epigenetic basis of cellular heterogeneity von Carter, Benjamin, Zhao, Keji

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Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition von Maunakea, Alika K, Chepelev, Iouri, Cui, Kairong, Zhao, Keji

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Single-cell chromatin immunocleavage sequencing (scChIC-seq) to profile histone modification von Ku, Wai Lim, Nakamura, Kosuke, Gao, Weiwu, Cui, Kairong, Hu, Gangqing, Tang, Qingsong, Ni, Bing, Zhao, Keji

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Genome-wide approaches to studying chromatin modifications von Schones, Dustin E, Zhao, Keji

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Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq) von Carter, Benjamin, Ku, Wai Lim, Kang, Jee Youn, Hu, Gangqing, Perrie, Jonathan, Tang, Qingsong, Zhao, Keji

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Establishing Chromatin Regulatory Landscape during Mouse Preimplantation Development von Lu, Falong, Liu, Yuting, Inoue, Azusa, Suzuki, Tsukasa, Zhao, Keji, Zhang, Yi

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The transcription factor TCF-1 enforces commitment to the innate lymphoid cell lineage von Harly, Christelle, Kenney, Devin, Ren, Gang, Lai, Binbin, Raabe, Tobias, Yang, Qi, Cam, Margaret C., Xue, Hai-Hui, Zhao, Keji, Bhandoola, Avinash

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The transcription factor Bhlhe40 is a switch of inflammatory versus antiinflammatory Th1 cell fate determination von Yu, Fang, Sharma, Suveena, Jankovic, Dragana, Gurram, Rama Krishna, Su, Pan, Hu, Gangqing, Li, Rao, Rieder, Sadiye, Zhao, Keji, Sun, Bing, Zhu, Jinfang

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Intrinsic Dynamics of a Human Gene Reveal the Basis of Expression Heterogeneity von Rodriguez, Joseph, Ren, Gang, Day, Christopher R., Zhao, Keji, Chow, Carson C., Larson, Daniel R.

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CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression von Ren, Gang, Jin, Wenfei, Cui, Kairong, Rodrigez, Joseph, Hu, Gangqing, Zhang, Zhiying, Larson, Daniel R., Zhao, Keji

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Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization von Chepelev, Iouri, Wei, Gang, Wangsa, Dara, Tang, Qingsong, Zhao, Keji

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Hi-TrAC reveals division of labor of transcription factors in organizing chromatin loops von Liu, Shuai, Cao, Yaqiang, Cui, Kairong, Tang, Qingsong, Zhao, Keji

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H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions von Zhao, Keji, Felsenfeld, Gary, Jin, Chunyuan, Zang, Chongzhi, Wei, Gang, Cui, Kairong, Peng, Weiqun

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KDM5B focuses H3K4 methylation near promoters and enhancers during embryonic stem cell self-renewal and differentiation von Kidder, Benjamin L, Hu, Gangqing, Zhao, Keji

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c-Myc Is a Universal Amplifier of Expressed Genes in Lymphocytes and Embryonic Stem Cells von Nie, Zuqin, Hu, Gangqing, Wei, Gang, Cui, Kairong, Yamane, Arito, Resch, Wolfgang, Wang, Ruoning, Green, Douglas R, Tessarollo, Lino, Casellas, Rafael, Zhao, Keji, Levens, David

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Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples von Jin, Wenfei, Tang, Qingsong, Wan, Mimi, Cui, Kairong, Zhang, Yi, Ren, Gang, Ni, Bing, Sklar, Jeffrey, Przytycka, Teresa M., Childs, Richard, Levens, David, Zhao, Keji

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Genomic location analysis by ChIP-Seq von Barski, Artem, Zhao, Keji

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Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells von Wu, Hao, D'Alessio, Ana C, Ito, Shinsuke, Wang, Zhibin, Cui, Kairong, Zhao, Keji, Sun, Yi Eve, Zhang, Yi

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TGF-β induces ST2 and programs ILC2 development von Wang, Li, Tang, Jun, Yang, Xia, Zanvit, Peter, Cui, Kairong, Ku, Wai Lim, Jin, Wenwen, Zhang, Dunfang, Goldberg, Nathan, Cain, Alexander, Ni, Bing, Zhao, Keji, Wu, Yuzhang, Chen, WanJun

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A clustering approach for identification of enriched domains from histone modification ChIP-Seq data von Zang, Chongzhi, Schones, Dustin E., Zeng, Chen, Cui, Kairong, Zhao, Keji, Peng, Weiqun

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