MSTopDiff: A Tool for the Visualization of Mass Shifts in Deconvoluted Top-Down Proteomics Data for the Database-Independent Detection of Protein Modifications von Kaulich, Philipp T, Winkels, Konrad, Kaulich, Tobias B, Treitz, Christian, Cassidy, Liam, Tholey, Andreas

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ReCo: automated NGS read-counting of single and combinatorial CRISPR gRNAs von Wegner, Martin, Kaulich, Manuel

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ReCo: automated NGS re ad- co unting of single and combinatorial CRISPR gRNAs von Wegner, Martin, Kaulich, Manuel

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Identification of proteoforms by top‐down proteomics using two‐dimensional low/low pH reversed‐phase liquid chromatography‐mass spectrometry von Kaulich, Philipp T., Cassidy, Liam, Tholey, Andreas

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Improved Identification of Proteoforms in Top-Down Proteomics Using FAIMS with Internal CV Stepping von Kaulich, Philipp T, Cassidy, Liam, Winkels, Konrad, Tholey, Andreas

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Depletion of High-Molecular-Mass Proteins for the Identification of Small Proteins and Short Open Reading Frame Encoded Peptides in Cellular Proteomes von Cassidy, Liam, Kaulich, Philipp T, Tholey, Andreas

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Epidermal Growth Factor Receptor Variant III (EGFRvIII) Positivity in EGFR -Amplified Glioblastomas: Prognostic Role and Comparison between Primary and Recurrent Tumors von Felsberg, Jörg, Hentschel, Bettina, Kaulich, Kerstin, Gramatzki, Dorothee, Zacher, Angela, Malzkorn, Bastian, Kamp, Marcel, Sabel, Michael, Simon, Matthias, Westphal, Manfred, Schackert, Gabriele, Tonn, Jörg C, Pietsch, Torsten, von Deimling, Andreas, Loeffler, Markus, Reifenberger, Guido, Weller, Michael

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Size-Based Proteome Fractionation through Polyacrylamide Gel Electrophoresis Combined with LC–FAIMS–MS for In-Depth Top-Down Proteomics von Takemori, Ayako, Kaulich, Philipp T., Cassidy, Liam, Takemori, Nobuaki, Tholey, Andreas

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The Nuclear SUMO-Targeted Ubiquitin Quality Control Network Regulates the Dynamics of Cytoplasmic Stress Granules von Keiten-Schmitz, Jan, Wagner, Kristina, Piller, Tanja, Kaulich, Manuel, Alberti, Simon, Müller, Stefan

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Influence of different sample preparation approaches on proteoform identification by top-down proteomics von Kaulich, Philipp T., Jeong, Kyowon, Kohlbacher, Oliver, Tholey, Andreas

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FLASHQuant: A Fast Algorithm for Proteoform Quantification in Top-Down Proteomics von Kim, Jihyung, Jeong, Kyowon, Kaulich, Philipp T., Winkels, Konrad, Tholey, Andreas, Kohlbacher, Oliver

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PEPPI-MS: gel-based sample pre-fractionation for deep top-down and middle-down proteomics von Takemori, Ayako, Kaulich, Philipp T, Tholey, Andreas, Takemori, Nobuaki

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CA125 Levels in BRCA mutation carriers - a retrospective single center cohort study von Gebhart, P, Singer, C F, Gschwantler-Kaulich, D

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Precursor deconvolution error estimation: The missing puzzle piece in false discovery rate in top‐down proteomics von Jeong, Kyowon, Kaulich, Philipp T., Jung, Wonhyeuk, Kim, Jihyung, Tholey, Andreas, Kohlbacher, Oliver

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Direct‐to‐implant breast reconstruction: Higher complication rate vs cosmetic benefits von Gschwantler‐Kaulich, Daphne, Leser, Carmen, Salama, Mohamed, Singer, Christian Fridolin

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Deubiquitinase USP10 regulates Notch signaling in the endothelium von Lim, R., Sugino, T., Nolte, H., Andrade, J., Zimmermann, B., Shi, C., Doddaballapur, A., Ong, Y. T., Wilhelm, K., Fasse, J. W. D., Ernst, A., Kaulich, M., Husnjak, K., Boettger, T., Guenther, S., Braun, T., Krüger, M., Benedito, R., Dikic, I., Potente, M.

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Autophagosomal Content Profiling Reveals an LC3C-Dependent Piecemeal Mitophagy Pathway von Le Guerroué, François, Eck, Franziska, Jung, Jennifer, Starzetz, Tatjana, Mittelbronn, Michel, Kaulich, Manuel, Behrends, Christian

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Validation of Top-Down Proteomics Data by Bottom-Up-Based N‑Terminomics Reveals Pitfalls in Top-Down-Based Terminomics Workflows von Winkels, Konrad, Koudelka, Tomas, Kaulich, Philipp T., Leippe, Matthias, Tholey, Andreas

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Bottom‐up and top‐down proteomic approaches for the identification, characterization, and quantification of the low molecular weight proteome with focus on short open reading frame... von Cassidy, Liam, Kaulich, Philipp T., Maaß, Sandra, Bartel, Jürgen, Becher, Dörte, Tholey, Andreas

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Multi-protease Approach for the Improved Identification and Molecular Characterization of Small Proteins and Short Open Reading Frame-Encoded Peptides von Kaulich, Philipp T, Cassidy, Liam, Bartel, Jürgen, Schmitz, Ruth A, Tholey, Andreas

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