MUON: multimodal omics analysis framework von Bredikhin, Danila, Kats, Ilia, Stegle, Oliver

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Interactions between nascent proteins translated by adjacent ribosomes drive homomer assembly von Bertolini, Matilde, Fenzl, Kai, Kats, Ilia, Wruck, Florian, Tippmann, Frank, Schmitt, Jaro, Auburger, Josef Johannes, Tans, Sander, Bukau, Bernd, Kramer, Gunter

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Spatial multiomics map of trophoblast development in early pregnancy von Arutyunyan, Anna, Roberts, Kenny, Troulé, Kevin, Wong, Frederick C. K., Sheridan, Megan A., Kats, Ilia, Garcia-Alonso, Luz, Velten, Britta, Hoo, Regina, Ruiz-Morales, Elias R., Sancho-Serra, Carmen, Shilts, Jarrod, Handfield, Louis-Francois, Marconato, Luca, Tuck, Elizabeth, Gardner, Lucy, Mazzeo, Cecilia Icoresi, Li, Qian, Kelava, Iva, Wright, Gavin J., Prigmore, Elena, Teichmann, Sarah A., Bayraktar, Omer Ali, Moffett, Ashley, Stegle, Oliver, Turco, Margherita Y., Vento-Tormo, Roser

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Bicoid gradient formation mechanism and dynamics revealed by protein lifetime analysis von Durrieu, Lucia, Kirrmaier, Daniel, Schneidt, Tatjana, Kats, Ilia, Raghavan, Sarada, Hufnagel, Lars, Saunders, Timothy E, Knop, Michael

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Spatio-temporal transcriptomics of chromothriptic SHH-medulloblastoma identifies multiple genetic clones that resist treatment and drive relapse von Kats, Ilia, Simovic-Lorenz, Milena, Schreiber, Hannah Sophia, Sant, Pooja, Mallm, Jan-Philipp, Körber, Verena, Li, Albert, Velmurugan, Pravin, Heuer, Sophie, Kües, Luisa, Devens, Frauke, Sill, Martin, Jugold, Manfred, Moustafa, Mahmoud, Abdollahi, Amir, Winkler, Frank, Korshunov, Andrey, Pfister, Stefan M., Stegle, Oliver, Ernst, Aurélie

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Genome-wide C-SWAT library for high-throughput yeast genome tagging von Meurer, Matthias, Duan, Yuanqiang, Sass, Ehud, Kats, Ilia, Herbst, Konrad, Buchmuller, Benjamin C., Dederer, Verena, Huber, Florian, Kirrmaier, Daniel, Štefl, Martin, Van Laer, Koen, Dick, Tobias P., Lemberg, Marius K., Khmelinskii, Anton, Levy, Emmanuel D., Knop, Michael

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The scverse project provides a computational ecosystem for single-cell omics data analysis von Virshup, Isaac, Bredikhin, Danila, Heumos, Lukas, Palla, Giovanni, Sturm, Gregor, Gayoso, Adam, Kats, Ilia, Koutrouli, Mikaela, Berger, Bonnie, Pe'er, Dana, Regev, Aviv, Teichmann, Sarah A, Finotello, Francesca, Wolf, F Alexander, Yosef, Nir, Stegle, Oliver, Theis, Fabian J

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PCR Duplication: A One-Step Cloning-Free Method to Generate Duplicated Chromosomal Loci and Interference-Free Expression Reporters in Yeast von Huber, Florian, Meurer, Matthias, Bunina, Daria, Kats, Ilia, Maeder, Céline I, Stefl, Martin, Mongis, Cyril, Knop, Michael

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Mapping Degradation Signals and Pathways in a Eukaryotic N-terminome von Kats, Ilia, Khmelinskii, Anton, Kschonsak, Marc, Huber, Florian, Knieß, Robert A., Bartosik, Anna, Knop, Michael

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SpatialData: an open and universal data framework for spatial omics von Marconato, Luca, Palla, Giovanni, Yamauchi, Kevin A, Virshup, Isaac, Heidari, Elyas, Treis, Tim, Vierdag, Wouter-Michiel, Toth, Marcella, Stockhaus, Sonja, Shrestha, Rahul B, Rombaut, Benjamin, Pollaris, Lotte, Lehner, Laurens, Vöhringer, Harald, Kats, Ilia, Saeys, Yvan, Saka, Sinem K, Huber, Wolfgang, Gerstung, Moritz, Moore, Josh, Theis, Fabian J, Stegle, Oliver

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Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase von Kong, Ka-Yiu Edwin, Fischer, Bernd, Meurer, Matthias, Kats, Ilia, Li, Zhaoyan, Rühle, Frank, Barry, Joseph D., Kirrmaier, Daniel, Chevyreva, Veronika, San Luis, Bryan-Joseph, Costanzo, Michael, Huber, Wolfgang, Andrews, Brenda J., Boone, Charles, Knop, Michael, Khmelinskii, Anton

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SpatialData : an open and universal data framework for spatial omics von Marconato, Luca, Palla, Giovanni, Yamauchi, Kevin A, Virshup, Isaac, Heidari, Elyas, Treis, Tim, Vierdag, Wouter-Michiel, Toth, Marcella, Stockhaus, Sonja, Shrestha, Rahul B, Rombaut, Benjamin, Pollaris, Lotte, Lehner, Laurens, Voehringer, Harald, Kats, Ilia, Saeys, Yvan, Saka, Sinem K, Huber, Wolfgang, Gerstung, Moritz, Moore, Josh, Theis, Fabian J, Stegle, Oliver

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Up-regulation of ubiquitin-proteasome activity upon loss of NatA-dependent N-terminal acetylation von Kats, Ilia, Reinbold, Christian, Kschonsak, Marc, Khmelinskii, Anton, Armbruster, Laura, Ruppert, Thomas, Knop, Michael

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Multiplexed protein stability (MPS) profiling of terminal degrons using fluorescent timer libraries in Saccharomyces cerevisiae von Reinbold, Christian, Kong, Ka-Yiu Edwin, Kats, Ilia, Khmelinskii, Anton, Knop, Michael

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The scverse project provides a computational ecosystem for single-cell omics data analysis von Virshup, Isaac, Bredikhin, Danila, Heumos, Lukas, Palla, Giovanni, Sturm, Gregor, Gayoso, Adam, Kats, Ilia, Koutrouli, Mikaela, Berger, Bonnie, Pe’er, Dana, Regev, Aviv, Teichmann, Sarah A., Finotello, Francesca, Wolf, F. Alexander, Yosef, Nir, Stegle, Oliver, Theis, Fabian J.

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Translational Regulation of Pmt1 and Pmt2 by Bfr1 Affects Unfolded Protein O-Mannosylation von Castells-Ballester, Joan, Rinis, Natalie, Kotan, Ilgin, Gal, Lihi, Bausewein, Daniela, Kats, Ilia, Zatorska, Ewa, Kramer, Günter, Bukau, Bernd, Schuldiner, Maya, Strahl, Sabine

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Upregulation of SPS100 gene expression by an antisense RNA via a switch of mRNA isoforms with different stabilities von Bunina, Daria, Štefl, Martin, Huber, Florian, Khmelinskii, Anton, Meurer, Matthias, Barry, Joseph D, Kats, Ilia, Kirrmaier, Daniel, Huber, Wolfgang, Knop, Michael

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SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy von Köthe, Ullrich, Herrmannsdörfer, Frank, Kats, Ilia, Hamprecht, Fred A.

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Live-cell multiphoton fluorescence correlation spectroscopy with an improved large Stokes shift fluorescent protein von Guan, Yinghua, Meurer, Matthias, Raghavan, Sarada, Rebane, Aleksander, Lindquist, Jake R, Santos, Sofia, Kats, Ilia, Davidson, Michael W, Mazitschek, Ralph, Hughes, Thomas E, Drobizhev, Mikhail, Knop, Michael, Shah, Jagesh V

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Creating functional engineered variants of the single-module non-ribosomal peptide synthetase IndC by T domain exchange von Beer, Ralf, Herbst, Konrad, Ignatiadis, Nikolaos, Kats, Ilia, Adlung, Lorenz, Meyer, Hannah, Niopek, Dominik, Christiansen, Tania, Georgi, Fanny, Kurzawa, Nils, Meichsner, Johanna, Rabe, Sophie, Riedel, Anja, Sachs, Joshua, Schessner, Julia, Schmidt, Florian, Walch, Philipp, Niopek, Katharina, Heinemann, Tim, Eils, Roland, Di Ventura, Barbara

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