Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice von Obertello, Mariana, Shrivastava, Stuti, Katari, Manpreet S., Coruzzi, Gloria M.

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A functional phylogenomic view of the seed plants von Lee, Ernest K, Cibrian-Jaramillo, Angelica, Kolokotronis, Sergios-Orestis, Katari, Manpreet S, Stamatakis, Alexandros, Ott, Michael, Chiu, Joanna C, Little, Damon P, Stevenson, Dennis Wm, McCombie, W Richard, Martienssen, Robert A, Coruzzi, Gloria, Desalle, Rob

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The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants von Li, Ying, Mukherjee, Indrani, Thum, Karen E, Tanurdzic, Milos, Katari, Manpreet S, Obertello, Mariana, Edwards, Molly B, McCombie, W Richard, Martienssen, Robert A, Coruzzi, Gloria M

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Plasticity regulators modulate specific root traits in discrete nitrogen environments von Gifford, Miriam L, Banta, Joshua A, Katari, Manpreet S, Hulsmans, Jo, Chen, Lisa, Ristova, Daniela, Tranchina, Daniel, Purugganan, Michael D, Coruzzi, Gloria M, Birnbaum, Kenneth D

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Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1 von Gutiérrez, Rodrigo A, Stokes, Trevor L, Thum, Karen, Xu, Xiaodong, Obertello, Mariana, Katari, Manpreet S, Tanurdzic, Milos, Dean, Alexis, Nero, Damion C, McClung, C. Robertson, Coruzzi, Gloria M

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Genetic analysis and QTL mapping for multiple biotic stress resistance in cassava von Garcia-Oliveira, Ana Luísa, Kimata, Bernadetha, Kasele, Salum, Kapinga, Fortunus, Masumba, Esther, Mkamilo, Geoffrey, Sichalwe, Caroline, Bredeson, Jessen V, Lyons, Jessica B, Shah, Trushar, Muranaka, Satoru, Katari, Manpreet S, Ferguson, Morag E

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Adjuvant crizotinib in high-risk uveal melanoma following definitive therapy von Khan, Shaheer, Lutzky, Jose, Shoushtari, Alexander N., Jeter, Joanne, Marr, Brian, Olencki, Thomas E., Cebulla, Colleen M., Abdel-Rahman, Mohamed, Harbour, J. William, Sender, Naomi, Nesson, Alexandra, Singh-Kandah, Shahnaz, Hernandez, Susana, King, Jeanelle, Katari, Manpreet S., Dimapanat, Lyssa, Izard, Stephanie, Ambrosini, Grazia, Surriga, Oliver, Rai, Alex J., Chiuzan, Codruta, Schwartz, Gary K., Carvajal, Richard D.

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Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots von Vidal, Elena A, Moyano, Tomás C, Krouk, Gabriel, Katari, Manpreet S, Tanurdzic, Milos, McCombie, W Richard, Coruzzi, Gloria M, Gutiérrez, Rodrigo A

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QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii von Nzuki, Inosters, Katari, Manpreet S, Bredeson, Jessen V, Masumba, Esther, Kapinga, Fortunus, Salum, Kasele, Mkamilo, Geoffrey S, Shah, Trushar, Lyons, Jessica B, Rokhsar, Daniel S, Rounsley, Steve, Myburg, Alexander A, Ferguson, Morag E

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The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data von de la Torre-Bárcena, Jose Eduardo, Kolokotronis, Sergios-Orestis, Lee, Ernest K, Stevenson, Dennis Wm, Brenner, Eric D, Katari, Manpreet S, Coruzzi, Gloria M, DeSalle, Rob

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An Optimized Procedure for Proteomic Analysis of Extracellular Vesicles Using In-Stage Tip Digestion and DIA LC-MS/MS: Application to Liquid Biopsy in Cancer von Soni, Rajesh Kumar, Dimapanat, Lyssa, Katari, Manpreet S., Rai, Alex J.

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Building High-Confidence Gene Regulatory Networks by Integrating Validated TF–Target Gene Interactions Using ConnecTF von Huang, Ji, Katari, Manpreet S., Juang, Che-Lun, Coruzzi, Gloria M., Brooks, Matthew D.

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VirtualPlant: A Software Platform to Support Systems Biology Research von Katari, Manpreet S, Nowicki, Steve D, Aceituno, Felipe F, Nero, Damion, Kelfer, Jonathan, Thompson, Lee Parnell, Cabello, Juan M, Davidson, Rebecca S, Goldberg, Arthur P, Shasha, Dennis E, Coruzzi, Gloria M, Gutiérrez, Rodrigo A

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In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana von Nero, Damion, Katari, Manpreet S, Kelfer, Jonathan, Tranchina, Daniel, Coruzzi, Gloria M

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EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes von Brenner, Eric D, Katari, Manpreet S, Stevenson, Dennis W, Rudd, Stephen A, Douglas, Andrew W, Moss, Walter N, Twigg, Richard W, Runko, Suzan J, Stellari, Giulia M, McCombie, W R, Coruzzi, Gloria M

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Using the Integrated Genome Viewer to reveal amplicon‐derived polymorphism enriched at the phenylthiocarbamide locus in the teaching lab von Brenner, Eric D., Scheid, Paul E., DeGrazia, Justin, Geltzeiler, Alexa R., Katari, Manpreet S.

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ESTimating plant phylogeny: lessons from partitioning von de la Torre, Jose E B, Egan, Mary G, Katari, Manpreet S, Brenner, Eric D, Stevenson, Dennis W, Coruzzi, Gloria M, DeSalle, Rob

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Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis von Obertello, Mariana, Krouk, Gabriel, Katari, Manpreet S, Runko, Suzan J, Coruzzi, Gloria M

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An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis von Thum, Karen E, Shin, Michael J, Gutiérrez, Rodrigo A, Mukherjee, Indrani, Katari, Manpreet S, Nero, Damion, Shasha, Dennis, Coruzzi, Gloria M

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Sungear: interactive visualization and functional analysis of genomic datasets von Poultney, Christopher S., Gutiérrez, Rodrigo A., Katari, Manpreet S., Gifford, Miriam L., Paley, W. Bradford, Coruzzi, Gloria M., Shasha, Dennis E.

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