Nucleosomal Fluctuations Govern the Transcription Dynamics of RNA Polymerase II von Hodges, Courtney, Bintu, Lacramioara, Lubkowska, Lucyna, Kashlev, Mikhail, Bustamante, Carlos

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Direct assessment of transcription fidelity by high-resolution RNA sequencing von Imashimizu, Masahiko, Oshima, Taku, Lubkowska, Lucyna, Kashlev, Mikhail

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NusG is an intrinsic transcription termination factor that stimulates motility and coordinates gene expression with NusA von Mandell, Zachary F, Oshiro, Reid T, Yakhnin, Alexander V, Vishwakarma, Rishi, Kashlev, Mikhail, Kearns, Daniel B, Babitzke, Paul

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Nascent RNA sequencing identifies a widespread sigma70-dependent pausing regulated by Gre factors in bacteria von Sun, Zhe, Yakhnin, Alexander V., FitzGerald, Peter C., Mclntosh, Carl E., Kashlev, Mikhail

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Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo von Imashimizu, Masahiko, Takahashi, Hiroki, Oshima, Taku, McIntosh, Carl, Bubunenko, Mikhail, Court, Donald L, Kashlev, Mikhail

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The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes von Bintu, Lacramioara, Kopaczynska, Marta, Hodges, Courtney, Lubkowska, Lucyna, Kashlev, Mikhail, Bustamante, Carlos

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Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism von Dangkulwanich, Manchuta, Ishibashi, Toyotaka, Liu, Shixin, Kireeva, Maria L, Lubkowska, Lucyna, Kashlev, Mikhail, Bustamante, Carlos J

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Mechanism of sequence-specific pausing of bacterial RNA polymerase von Kireeva, Maria L, Kashlev, Mikhail

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The Role of Pyrophosphorolysis in the Initiation-to-Elongation Transition by E. coli RNA Polymerase von Imashimizu, Masahiko, Kireeva, Maria L., Lubkowska, Lucyna, Kashlev, Mikhail, Shimamoto, Nobuo

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Unveiling translocation intermediates of RNA polymerase von Imashimizu, Masahiko, Kashlev, Mikhail

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Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions von Walmacq, Celine, Wang, Lanfeng, Chong, Jenny, Scibelli, Kathleen, Lubkowska, Lucyna, Gnatt, Averell, Brooks, Philip J., Wang, Dong, Kashlev, Mikhail

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RNA-DNA and DNA-DNA base-pairing at the upstream edge of the transcription bubble regulate translocation of RNA polymerase and transcription rate von KIreeva, Maria, Trang, Cyndi, Matevosyan, Gayane, Turek-Herman, Joshua, Chasov, Vitaly, Lubkowska, Lucyna, Kashlev, Mikhail

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CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing von SHUKLA, Sanjeev, KAVAK, Ersen, GREGORY, Melissa, IMASHIMIZU, Masahiko, SHUTINOSKI, Bojan, KASHLEV, Mikhail, OBERDOERFFER, Philipp, SANDBERG, Rickard, OBERDOERFFER, Shalini

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Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner von Galburt, Eric A, Nogales, Eva, Wiedmann, Anna, Lubkowska, Lucyna, Bustamante, Carlos, Grill, Stephan W, Choy, Jason, Kashlev, Mikhail

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Mechanism of Translesion Transcription by RNA Polymerase II and Its Role in Cellular Resistance to DNA Damage von Walmacq, Celine, Cheung, Alan C.M., Kireeva, Maria L., Lubkowska, Lucyna, Ye, Chengcheng, Gotte, Deanna, Strathern, Jeffrey N., Carell, Thomas, Cramer, Patrick, Kashlev, Mikhail

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Sensitivity of mitochondrial transcription and resistance of RNA polymerase II dependent nuclear transcription to antiviral ribonucleosides von Arnold, Jamie J, Sharma, Suresh D, Feng, Joy Y, Ray, Adrian S, Smidansky, Eric D, Kireeva, Maria L, Cho, Aesop, Perry, Jason, Vela, Jennifer E, Park, Yeojin, Xu, Yili, Tian, Yang, Babusis, Darius, Barauskus, Ona, Peterson, Blake R, Gnatt, Averell, Kashlev, Mikhail, Zhong, Weidong, Cameron, Craig E

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Comprehensive transcription terminator atlas for Bacillus subtilis von Mandell, Zachary F., Vishwakarma, Rishi K., Yakhnin, Helen, Murakami, Katsuhiko S., Kashlev, Mikhail, Babitzke, Paul

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Transcription factors IIS and IIF enhance transcription efficiency by differentially modifying RNA polymerase pausing dynamics von Ishibashi, Toyotaka, Dangkulwanich, Manchuta, Coello, Yves, Lionberger, Troy A., Lubkowska, Lucyna, Ponticelli, Alfred S., Kashlev, Mikhail, Bustamante, Carlos

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Synergistic action of RNA polymerases in overcoming the nucleosomal barrier von Kireeva, Maria L, Bai, Lu, Johnson, Daniel S, Wang, Michelle D, Jin, Jing, Fulbright, Robert M, Kashlev, Mikhail

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Transient Reversal of RNA Polymerase II Active Site Closing Controls Fidelity of Transcription Elongation von Kireeva, Maria L., Nedialkov, Yuri A., Cremona, Gina H., Purtov, Yuri A., Lubkowska, Lucyna, Malagon, Francisco, Burton, Zachary F., Strathern, Jeffrey N., Kashlev, Mikhail

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