The MetaCyc database of metabolic pathways and enzymes - a 2019 update von Caspi, Ron, Billington, Richard, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D

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The MetaCyc database of metabolic pathways and enzymes von Caspi, Ron, Billington, Richard, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D

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The BioCyc collection of microbial genomes and metabolic pathways von Karp, Peter D, Billington, Richard, Caspi, Ron, Fulcher, Carol A, Latendresse, Mario, Kothari, Anamika, Keseler, Ingrid M, Krummenacker, Markus, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne M, Subhraveti, Pallavi

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases von Caspi, Ron, Billington, Richard, Ferrer, Luciana, Foerster, Hartmut, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A, Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S, Karp, Peter D

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Machine learning methods for metabolic pathway prediction von Dale, Joseph M, Popescu, Liviu, Karp, Peter D

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The BioCyc Metabolic Network Explorer von Paley, Suzanne, Karp, Peter D

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Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics von Karp, Peter D, Midford, Peter E, Caspi, Ron, Khodursky, Arkady

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Revisiting the y-ome of Escherichia coli von Moore, Lisa R, Caspi, Ron, Boyd, Dana, Berkmen, Mehmet, Mackie, Amanda, Paley, Suzanne, Karp, Peter D

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases von Caspi, Ron, Altman, Tomer, Billington, Richard, Dreher, Kate, Foerster, Hartmut, Fulcher, Carol A, Holland, Timothy A, Keseler, Ingrid M, Kothari, Anamika, Kubo, Aya, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A, Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S, Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D

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The EcoCyc Database in 2021 von Keseler, Ingrid M, Gama-Castro, Socorro, Mackie, Amanda, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Muñiz-Rascado, Luis, Ong, Wai Kit, Paley, Suzanne, Santos-Zavaleta, Alberto, Subhraveti, Pallavi, Tierrafría, Víctor H, Wolfe, Alan J, Collado-Vides, Julio, Paulsen, Ian T, Karp, Peter D

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Reviewing knowledgebase and database grant proposals in the life sciences: the role of innovation von Karp, Peter D

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The challenge of constructing, classifying, and representing metabolic pathways von Caspi, Ron, Dreher, Kate, Karp, Peter D.

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Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology von Karp, Peter D, Midford, Peter E, Billington, Richard, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Ong, Wai Kit, Subhraveti, Pallavi, Caspi, Ron, Fulcher, Carol, Keseler, Ingrid M, Paley, Suzanne M

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A systematic comparison of the MetaCyc and KEGG pathway databases von Altman, Tomer, Travers, Michael, Kothari, Anamika, Caspi, Ron, Karp, Peter D

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The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 von Keseler, Ingrid M, Mackie, Amanda, Santos-Zavaleta, Alberto, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Fulcher, Carol, Gama-Castro, Socorro, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Peralta-Gil, Martin, Subhraveti, Pallavi, Velázquez-Ramírez, David A, Weaver, Daniel, Collado-Vides, Julio, Paulsen, Ian, Karp, Peter D

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How accurate is automated gap filling of metabolic models? von Karp, Peter D, Weaver, Daniel, Latendresse, Mario

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The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database von Paley, Suzanne, Karp, Peter D

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Evaluation of reaction gap-filling accuracy by randomization von Latendresse, Mario, Karp, Peter D

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Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae von Hawkins, Charles, Ginzburg, Daniel, Zhao, Kangmei, Dwyer, William, Xue, Bo, Xu, Angela, Rice, Selena, Cole, Benjamin, Paley, Suzanne, Karp, Peter, Rhee, Seung Y.

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The Comparative Genome Dashboard von Paley, Suzanne, Caspi, Ron, O'Maille, Paul, Karp, Peter D

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