A systematic comparison of the MetaCyc and KEGG pathway databases von Altman, Tomer, Travers, Michael, Kothari, Anamika, Caspi, Ron, Karp, Peter D

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The BioCyc Metabolic Network Explorer von Paley, Suzanne, Karp, Peter D

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Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics von Karp, Peter D, Midford, Peter E, Caspi, Ron, Khodursky, Arkady

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Evaluation of reaction gap-filling accuracy by randomization von Latendresse, Mario, Karp, Peter D

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Metabolic Modeling with MetaFlux von Latendresse, Mario, Ong, Wai Kit, Karp, Peter D.

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The challenge of constructing, classifying, and representing metabolic pathways von Caspi, Ron, Dreher, Kate, Karp, Peter D.

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Taxonomic weighting improves the accuracy of a gap-filling algorithm for metabolic models von Ong, Wai Kit, Midford, Peter E, Karp, Peter D

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The Comparative Genome Dashboard von Paley, Suzanne, Caspi, Ron, O'Maille, Paul, Karp, Peter D

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How accurate is automated gap filling of metabolic models? von Karp, Peter D, Weaver, Daniel, Latendresse, Mario

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A survey of metabolic databases emphasizing the MetaCyc family von Karp, Peter D., Caspi, Ron

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Machine learning methods for metabolic pathway prediction von Dale, Joseph M, Popescu, Liviu, Karp, Peter D

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Optimal metabolic route search based on atom mappings von Latendresse, Mario, Krummenacker, Markus, Karp, Peter D

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Web-based metabolic network visualization with a zooming user interface von Latendresse, Mario, Karp, Peter D

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Accurate Atom-Mapping Computation for Biochemical Reactions von Latendresse, Mario, Malerich, Jeremiah P, Travers, Mike, Karp, Peter D

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Reviewing knowledgebase and database grant proposals in the life sciences: the role of innovation von Karp, Peter D

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The MetaCyc database of metabolic pathways and enzymes - a 2019 update von Caspi, Ron, Billington, Richard, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D

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The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database von Paley, Suzanne, Karp, Peter D

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An evaluation of ChatGPT and Bard (Gemini) in the context of biological knowledge retrieval von Caspi, Ron, Karp, Peter D

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The Omics Dashboard for Interactive Exploration of Metabolomics and Multi-Omics Data von Paley, Suzanne, Karp, Peter D

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The MetaCyc database of metabolic pathways and enzymes von Caspi, Ron, Billington, Richard, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D

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