Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis von Tsukui, Tatsuya, Sun, Kai-Hui, Wetter, Joseph B., Wilson-Kanamori, John R., Hazelwood, Lisa A., Henderson, Neil C., Adams, Taylor S., Schupp, Jonas C., Poli, Sergio D., Rosas, Ivan O., Kaminski, Naftali, Matthay, Michael A., Wolters, Paul J., Sheppard, Dean

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Aging Impairs Alveolar Macrophage Phagocytosis and Increases Influenza-Induced Mortality in Mice von Wong, Christine K, Smith, Candice A, Sakamoto, Koji, Kaminski, Naftali, Koff, Jonathan L, Goldstein, Daniel R

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Expression of SARS-CoV-2 receptor ACE2 and coincident host response signature varies by asthma inflammatory phenotype von Camiolo, Matthew, Gauthier, Marc, Kaminski, Naftali, Ray, Anuradha, Wenzel, Sally E.

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The Idiopathic Pulmonary Fibrosis Cell Atlas von Neumark, Nir, Cosme, Jr, Carlos, Rose, Kadi-Ann, Kaminski, Naftali

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Computation and visualization of cell–cell signaling topologies in single-cell systems data using Connectome von Raredon, Micha Sam Brickman, Yang, Junchen, Garritano, James, Wang, Meng, Kushnir, Dan, Schupp, Jonas Christian, Adams, Taylor S., Greaney, Allison M., Leiby, Katherine L., Kaminski, Naftali, Kluger, Yuval, Levchenko, Andre, Niklason, Laura E.

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Idiopathic pulmonary fibrosis: aberrant recapitulation of developmental programs? von Selman, Moisés, Pardo, Annie, Kaminski, Naftali

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Distinct roles of KLF4 in mesenchymal cell subtypes during lung fibrogenesis von Chandran, Rachana R., Xie, Yi, Gallardo-Vara, Eunate, Adams, Taylor, Garcia-Milian, Rolando, Kabir, Inamul, Sheikh, Abdul Q., Kaminski, Naftali, Martin, Kathleen A., Herzog, Erica L., Greif, Daniel M.

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Biomarkers in idiopathic pulmonary fibrosis von Zhang, Yingze, Kaminski, Naftali

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miR-21 mediates fibrogenic activation of pulmonary fibroblasts and lung fibrosis von Liu, Gang, Friggeri, Arnaud, Yang, Yanping, Milosevic, Jadranka, Ding, Qiang, Thannickal, Victor J, Kaminski, Naftali, Abraham, Edward

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Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis von Adams, Taylor S, Schupp, Jonas C, Poli, Sergio, Ayaub, Ehab A, Neumark, Nir, Ahangari, Farida, Chu, Sarah G, Raby, Benjamin A, DeIuliis, Giuseppe, Januszyk, Michael, Duan, Qiaonan, Arnett, Heather A, Siddiqui, Asim, Washko, George R, Homer, Robert, Yan, Xiting, Rosas, Ivan O, Kaminski, Naftali

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Mesenchymal stem cells use extracellular vesicles to outsource mitophagy and shuttle microRNAs von Phinney, Donald G., Di Giuseppe, Michelangelo, Njah, Joel, Sala, Ernest, Shiva, Sruti, St Croix, Claudette M., Stolz, Donna B., Watkins, Simon C., Di, Y. Peter, Leikauf, George D., Kolls, Jay, Riches, David W. H., Deiuliis, Giuseppe, Kaminski, Naftali, Boregowda, Siddaraju V., McKenna, David H., Ortiz, Luis A.

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Thyroid hormone inhibits lung fibrosis in mice by improving epithelial mitochondrial function von Yu, Guoying, Tzouvelekis, Argyris, Wang, Rong, Herazo-Maya, Jose D, Ibarra, Gabriel H, Srivastava, Anup, de Castro, Joao Pedro Werneck, DeIuliis, Giuseppe, Ahangari, Farida, Woolard, Tony, Aurelien, Nachelle, Arrojo e Drigo, Rafael, Gan, Ye, Graham, Morven, Liu, Xinran, Homer, Robert J, Scanlan, Thomas S, Mannam, Praveen, Lee, Patty J, Herzog, Erica L, Bianco, Antonio C, Kaminski, Naftali

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Type I interferon transcriptional network regulates expression of coinhibitory receptors in human T cells von Sumida, Tomokazu S., Dulberg, Shai, Schupp, Jonas C., Lincoln, Matthew R., Stillwell, Helen A., Axisa, Pierre-Paul, Comi, Michela, Unterman, Avraham, Kaminski, Naftali, Madi, Asaf, Kuchroo, Vijay K., Hafler, David A.

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Long-term exposure to silica dust and risk of total and cause-specific mortality in Chinese workers: a cohort study von Chen, Weihong, Liu, Yuewei, Wang, Haijiao, Hnizdo, Eva, Sun, Yi, Su, Liangping, Zhang, Xiaokang, Weng, Shaofan, Bochmann, Frank, Hearl, Frank J, Chen, Jingqiong, Wu, Tangchun

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BAL Cell Gene Expression Is Indicative of Outcome and Airway Basal Cell Involvement in Idiopathic Pulmonary Fibrosis von Prasse, Antje, Binder, Harald, Schupp, Jonas C, Kayser, Gian, Bargagli, Elena, Jaeger, Benedikt, Hess, Moritz, Rittinghausen, Susanne, Vuga, Louis, Lynn, Heather, Violette, Shelia, Jung, Birgit, Quast, Karsten, Vanaudenaerde, Bart, Xu, Yan, Hohlfeld, Jens M, Krug, Norbert, Herazo-Maya, Jose D, Rottoli, Paola, Wuyts, Wim A, Kaminski, Naftali

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The Human Lung Cell Atlas: A High-Resolution Reference Map of the Human Lung in Health and Disease von Schiller, Herbert B, Montoro, Daniel T, Simon, Lukas M, Rawlins, Emma L, Meyer, Kerstin B, Strunz, Maximilian, Vieira Braga, Felipe A, Timens, Wim, Koppelman, Gerard H, Budinger, G R Scott, Burgess, Janette K, Waghray, Avinash, van den Berge, Maarten, Theis, Fabian J, Regev, Aviv, Kaminski, Naftali, Rajagopal, Jayaraj, Teichmann, Sarah A, Misharin, Alexander V, Nawijn, Martijn C

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Impact of Transcriptomics on Our Understanding of Pulmonary Fibrosis von Vukmirovic, Milica, Kaminski, Naftali

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Reconstructed Single-Cell Fate Trajectories Define Lineage Plasticity Windows during Differentiation of Human PSC-Derived Distal Lung Progenitors von Hurley, Killian, Ding, Jun, Villacorta-Martin, Carlos, Herriges, Michael J., Jacob, Anjali, Vedaie, Marall, Alysandratos, Konstantinos D., Sun, Yuliang L., Lin, Chieh, Werder, Rhiannon B., Huang, Jessie, Wilson, Andrew A., Mithal, Aditya, Mostoslavsky, Gustavo, Oglesby, Irene, Caballero, Ignacio S., Guttentag, Susan H., Ahangari, Farida, Kaminski, Naftali, Rodriguez-Fraticelli, Alejo, Camargo, Fernando, Bar-Joseph, Ziv, Kotton, Darrell N.

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An HDAC9-MALAT1-BRG1 complex mediates smooth muscle dysfunction in thoracic aortic aneurysm von Lino Cardenas, Christian L., Kessinger, Chase W., Cheng, Yisha, MacDonald, Carolyn, MacGillivray, Thomas, Ghoshhajra, Brian, Huleihel, Luai, Nuri, Saifar, Yeri, Ashish S., Jaffer, Farouc A., Kaminski, Naftali, Ellinor, Patrick, Weintraub, Neal L., Malhotra, Rajeev, Isselbacher, Eric M., Lindsay, Mark E.

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A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data von Li, Hongyu, Zhu, Biqing, Xu, Zhichao, Adams, Taylor, Kaminski, Naftali, Zhao, Hongyu

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