Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition von Maunakea, Alika K, Chepelev, Iouri, Cui, Kairong, Zhao, Keji

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Single-cell chromatin immunocleavage sequencing (scChIC-seq) to profile histone modification von Ku, Wai Lim, Nakamura, Kosuke, Gao, Weiwu, Cui, Kairong, Hu, Gangqing, Tang, Qingsong, Ni, Bing, Zhao, Keji

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CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression von Ren, Gang, Jin, Wenfei, Cui, Kairong, Rodrigez, Joseph, Hu, Gangqing, Zhang, Zhiying, Larson, Daniel R., Zhao, Keji

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Hi-TrAC reveals division of labor of transcription factors in organizing chromatin loops von Liu, Shuai, Cao, Yaqiang, Cui, Kairong, Tang, Qingsong, Zhao, Keji

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H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions von Zhao, Keji, Felsenfeld, Gary, Jin, Chunyuan, Zang, Chongzhi, Wei, Gang, Cui, Kairong, Peng, Weiqun

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c-Myc Is a Universal Amplifier of Expressed Genes in Lymphocytes and Embryonic Stem Cells von Nie, Zuqin, Hu, Gangqing, Wei, Gang, Cui, Kairong, Yamane, Arito, Resch, Wolfgang, Wang, Ruoning, Green, Douglas R, Tessarollo, Lino, Casellas, Rafael, Zhao, Keji, Levens, David

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Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples von Jin, Wenfei, Tang, Qingsong, Wan, Mimi, Cui, Kairong, Zhang, Yi, Ren, Gang, Ni, Bing, Sklar, Jeffrey, Przytycka, Teresa M., Childs, Richard, Levens, David, Zhao, Keji

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Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells von Wu, Hao, D'Alessio, Ana C, Ito, Shinsuke, Wang, Zhibin, Cui, Kairong, Zhao, Keji, Sun, Yi Eve, Zhang, Yi

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TGF-β induces ST2 and programs ILC2 development von Wang, Li, Tang, Jun, Yang, Xia, Zanvit, Peter, Cui, Kairong, Ku, Wai Lim, Jin, Wenwen, Zhang, Dunfang, Goldberg, Nathan, Cain, Alexander, Ni, Bing, Zhao, Keji, Wu, Yuzhang, Chen, WanJun

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A clustering approach for identification of enriched domains from histone modification ChIP-Seq data von Zang, Chongzhi, Schones, Dustin E., Zeng, Chen, Cui, Kairong, Zhao, Keji, Peng, Weiqun

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Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum von López-Barragán, María J, Lemieux, Jacob, Quiñones, Mariam, Williamson, Kim C, Molina-Cruz, Alvaro, Cui, Kairong, Barillas-Mury, Carolina, Zhao, Keji, Su, Xin-zhuan

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Genome-wide Mapping of HATs and HDACs Reveals Distinct Functions in Active and Inactive Genes von Wang, Zhibin, Zang, Chongzhi, Cui, Kairong, Schones, Dustin E., Barski, Artem, Peng, Weiqun, Zhao, Keji

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Group 3 innate lymphoid cells continuously require the transcription factor GATA-3 after commitment von Zhong, Chao, Cui, Kairong, Wilhelm, Christoph, Hu, Gangqing, Mao, Kairui, Belkaid, Yasmine, Zhao, Keji, Zhu, Jinfang

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Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells von Zhang, Yi, Wu, Hao, D'Alessio, Ana C, Ito, Shinsuke, Xia, Kai, Wang, Zhibin, Cui, Kairong, Zhao, Keji, Eve Sun, Yi

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Bcl11b, a novel GATA3-interacting protein, suppresses Th1 while limiting Th2 cell differentiation von Fang, Difeng, Cui, Kairong, Hu, Gangqing, Gurram, Rama Krishna, Zhong, Chao, Oler, Andrew J, Yagi, Ryoji, Zhao, Ming, Sharma, Suveena, Liu, Pentao, Sun, Bing, Zhao, Keji, Zhu, Jinfang

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Single-cyst transcriptome analysis of Drosophila male germline stem cell lineage von Shi, Zhen, Lim, Cindy, Tran, Vuong, Cui, Kairong, Zhao, Keji, Chen, Xin

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Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains von Cuddapah, Suresh, Jothi, Raja, Schones, Dustin E, Roh, Tae-Young, Cui, Kairong, Zhao, Keji

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Combinatorial patterns of histone acetylations and methylations in the human genome von Zhao, Keji, Wang, Zhibin, Zang, Chongzhi, Rosenfeld, Jeffrey A, Schones, Dustin E, Barski, Artem, Cuddapah, Suresh, Cui, Kairong, Roh, Tae-Young, Peng, Weiqun, Zhang, Michael Q

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Differential Expression of the Transcription Factor GATA3 Specifies Lineage and Functions of Innate Lymphoid Cells von Zhong, Chao, Zheng, Mingzhu, Cui, Kairong, Martins, Andrew J., Hu, Gangqing, Li, Dan, Tessarollo, Lino, Kozlov, Serguei, Keller, Jonathan R., Tsang, John S., Zhao, Keji, Zhu, Jinfang

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Dynamic Regulation of Nucleosome Positioning in the Human Genome von Schones, Dustin E., Cui, Kairong, Cuddapah, Suresh, Roh, Tae-Young, Barski, Artem, Wang, Zhibin, Wei, Gang, Zhao, Keji

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