Simultaneous modelling of metabolic, genetic and product-interaction networks von Juty, N S, Spence, H D, Hotz, H R, Tang, H, Goryanin, I, Hodgman, T C

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The systems biology markup language (SBML): a medium forrepresentation and exchange of biochemical network models von Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., Cuellar, A. A., Dronov, S., Gilles, E. D., Ginkel, M., Gor, V., Goryanin, I. I., Hedley, W. J., Hodgman, T. C., Hofmeyr, J.-H., Hunter, P. J., Juty, N. S., Kasberger, J. L., Kremling, A., Kummer, U., Le Novère, N., Loew, L. M., Lucio, D., Mendes, P., Minch, E., Mjolsness, E. D., Nakayama, Y., Nelson, M. R., Nielsen, P. F., Sakurada, T., Schaff, J. C., Shapiro, B. E., Shimizu, T. S., Spence, H. D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., Wang, J.

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BioModels: Content, Features, Functionality, and Use von Juty, N, Ali, R, Glont, M, Keating, S, Rodriguez, N, Swat, MJ, Wimalaratne, SM, Hermjakob, H, Le Novère, N, Laibe, C, Chelliah, V

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The Input Signal Step Function (ISSF), a Standard Method to Encode Input Signals in SBML Models with Software Support, Applied to Circadian Clock Models von Adams, R.R., Tsorman, N., Stratford, K., Akman, O.E., Gilmore, S., Juty, N., Le Novère, N., Millar, A.J., Millar, A.J.

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Harmonizing semantic annotations for computational models in biology von Neal, ML, König, M, Nickerson, D, Mısırlı, G, Kalbasi, R, Dräger, A, Atalag, K, Chelliah, V, Cooling, MT, Cook, DL, Crook, S, de Alba, M, Friedman, SH, Garny, A, Gennari, JH, Gleeson, P, Golebiewski, M, Hucka, M, Juty, N, Myers, C, Olivier, BG, Sauro, HM, Scharm, M, Snoep, JL, Touré, V, Wipat, A, Wolkenhauer, O, Waltemath, D

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Identifiers for the 21st century: how to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data von McMurry, J.A., Juty, N., Blomberg, N., Burdett, T., Conlin, T., Conte, N., Courtot, M., Deck, J., Dumontier, M., Fellows, D.K., Gonzalez-Beltran, A., Gormanns, P., Grethe, J., Hastings, J., Heriche, J.-K., Hermjakob, H., Ison, J.C., Jimenez, R.C., Jupp, S., Kunze, J., Laibe, C., Novere, N. le, Malone, J., Martin, M.J., McEntyre, J.R., Morris, C., Muilu, J., Mueller, W., Rocca-Serra, P., Sansone, S.-A., Sariyar, M., Snoep, J.L., Soiland-Reyes, S., Stanford, N.J., Swainston, N., Washington, N., Williams, A.R., Wimalaratne, S.M., Winfree, L.M., Wolstencroft, K.J., Goble, C., Mungall, C.J., Haendel, M.A., Parkinson, H.

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