GSVA: gene set variation analysis for microarray and RNA-seq data von Hänzelmann, Sonja, Castelo, Robert, Guinney, Justin

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Consensus molecular subtypes and the evolution of precision medicine in colorectal cancer von Dienstmann, Rodrigo, Vermeulen, Louis, Guinney, Justin, Kopetz, Scott, Tejpar, Sabine, Tabernero, Josep

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American Joint Committee on Cancer acceptance criteria for inclusion of risk models for individualized prognosis in the practice of precision medicine von Kattan, Michael W., Hess, Kenneth R., Amin, Mahul B., Lu, Ying, Moons, Karl G.M., Gershenwald, Jeffrey E., Gimotty, Phyllis A., Guinney, Justin H., Halabi, Susan, Lazar, Alexander J., Mahar, Alyson L., Patel, Tushar, Sargent, Daniel J., Weiser, Martin R., Compton, Carolyn

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Colorectal Cancer Consensus Molecular Subtypes Translated to Preclinical Models Uncover Potentially Targetable Cancer Cell Dependencies von Sveen, Anita, Bruun, Jarle, Eide, Peter W, Eilertsen, Ina A, Ramirez, Lorena, Murumägi, Astrid, Arjama, Mariliina, Danielsen, Stine A, Kryeziu, Kushtrim, Elez, Elena, Tabernero, Josep, Guinney, Justin, Palmer, Hector G, Nesbakken, Arild, Kallioniemi, Olli, Dienstmann, Rodrigo, Lothe, Ragnhild A

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BRAF V600E Mutant Colorectal Cancer Subtypes Based on Gene Expression von Barras, David, Missiaglia, Edoardo, Wirapati, Pratyaksha, Sieber, Oliver M, Jorissen, Robert N, Love, Chris, Molloy, Peter L, Jones, Ian T, McLaughlin, Stephen, Gibbs, Peter, Guinney, Justin, Simon, Iris M, Roth, Arnaud D, Bosman, Fred T, Tejpar, Sabine, Delorenzi, Mauro

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Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates von Hannum, Gregory, Guinney, Justin, Zhao, Ling, Zhang, Li, Hughes, Guy, Sadda, SriniVas, Klotzle, Brandy, Bibikova, Marina, Fan, Jian-Bing, Gao, Yuan, Deconde, Rob, Chen, Menzies, Rajapakse, Indika, Friend, Stephen, Ideker, Trey, Zhang, Kang

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KRAS Mutation and Consensus Molecular Subtypes 2 and 3 Are Independently Associated with Reduced Immune Infiltration and Reactivity in Colorectal Cancer von Lal, Neeraj, White, Brian S, Goussous, Ghaleb, Pickles, Oliver, Mason, Mike J, Beggs, Andrew D, Taniere, Philippe, Willcox, Benjamin E, Guinney, Justin, Middleton, Gary W

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A Multifaceted benchmarking of synthetic electronic health record generation models von Yan, Chao, Yan, Yao, Wan, Zhiyu, Zhang, Ziqi, Omberg, Larsson, Guinney, Justin, Mooney, Sean D., Malin, Bradley A.

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Database of genomic biomarkers for cancer drugs and clinical targetability in solid tumors von Dienstmann, Rodrigo, Jang, In Sock, Bot, Brian, Friend, Stephen, Guinney, Justin

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Evidence for type II cells as cells of origin of K-Ras–induced distal lung adenocarcinoma von Xu, Xia, Rock, Jason R, Lu, Yun, Futtner, Christopher, Schwab, Brian, Guinney, Justin, Hogan, Brigid L. M, Onaitis, Mark W

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F-Seq: a feature density estimator for high-throughput sequence tags von Boyle, Alan P., Guinney, Justin, Crawford, Gregory E., Furey, Terrence S.

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Integrated molecular and clinical analysis of low-grade gliomas in children with neurofibromatosis type 1 (NF1) von Fisher, Michael J., Jones, David T. W., Li, Yimei, Guo, Xiaofan, Sonawane, Poonam S., Waanders, Angela J., Phillips, Joanna J., Weiss, William A., Resnick, Adam C., Gosline, Sara, Banerjee, Jineta, Guinney, Justin, Gnekow, Astrid, Kandels, Daniela, Foreman, Nicholas K., Korshunov, Andrey, Ryzhova, Marina, Massimi, Luca, Gururangan, Sri, Kieran, Mark W., Wang, Zhihong, Fouladi, Maryam, Sato, Mariko, Øra, Ingrid, Holm, Stefan, Markham, Stephen J., Beck, Pengbo, Jäger, Natalie, Wittmann, Andrea, Sommerkamp, Alexander C., Sahm, Felix, Pfister, Stefan M., Gutmann, David H.

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CRI iAtlas: an interactive portal for immuno-oncology research [version 1; peer review: 3 approved] von Eddy, James A, Thorsson, Vésteinn, Lamb, Andrew E, Gibbs, David L, Heimann, Carolina, Yu, Jia Xin, Chung, Verena, Chae, Yooree, Dang, Kristen, Vincent, Benjamin G, Shmulevich, Ilya, Guinney, Justin

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Spatiotemporal Loss of NF1 in Schwann Cell Lineage Leads to Different Types of Cutaneous Neurofibroma Susceptible to Modification by the Hippo Pathway von Chen, Zhiguo, Mo, Juan, Brosseau, Jean-Philippe, Shipman, Tracey, Wang, Yong, Liao, Chung-Ping, Cooper, Jonathan M, Allaway, Robert J, Gosline, Sara J C, Guinney, Justin, Carroll, Thomas J, Le, Lu Q

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Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells von Roumeliotis, Theodoros I., Williams, Steven P., Gonçalves, Emanuel, Alsinet, Clara, Del Castillo Velasco-Herrera, Martin, Aben, Nanne, Ghavidel, Fatemeh Zamanzad, Michaut, Magali, Schubert, Michael, Price, Stacey, Wright, James C., Yu, Lu, Yang, Mi, Dienstmann, Rodrigo, Guinney, Justin, Beltrao, Pedro, Brazma, Alvis, Pardo, Mercedes, Stegle, Oliver, Adams, David J., Wessels, Lodewyk, Saez-Rodriguez, Julio, McDermott, Ultan, Choudhary, Jyoti S.

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CTCF Haploinsufficiency Destabilizes DNA Methylation and Predisposes to Cancer von Kemp, Christopher J., Moore, James M., Moser, Russell, Bernard, Brady, Teater, Matt, Smith, Leslie E., Rabaia, Natalia A., Gurley, Kay E., Guinney, Justin, Busch, Stephanie E., Shaknovich, Rita, Lobanenkov, Victor V., Liggitt, Denny, Shmulevich, Ilya, Melnick, Ari, Filippova, Galina N.

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Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges von Ellrott, Kyle, Buchanan, Alex, Creason, Allison, Mason, Michael, Schaffter, Thomas, Hoff, Bruce, Eddy, James, Chilton, John M, Yu, Thomas, Stuart, Joshua M, Saez-Rodriguez, Julio, Stolovitzky, Gustavo, Boutros, Paul C, Guinney, Justin

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Association of genetic ancestry with molecular tumor profiles in colorectal cancer von Rhead, Brooke, Hein, David M, Pouliot, Yannick, Guinney, Justin, De La Vega, Francisco M, Sanford, Nina N

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Molecular response in newly diagnosed chronic-phase chronic myeloid leukemia: prediction modeling and pathway analysis von Radich, Jerald P, Wall, Matthew, Branford, Susan, Campbell, Catarina D, Chaturvedi, Shalini, DeAngelo, Daniel J, Deininger, Michael, Guinney, Justin, Hochhaus, Andreas, Hughes, Timothy P, Kantarjian, Hagop M, Larson, Richard A, Li, Sai, Maegawa, Rodrigo, Mishra, Kaushal, Obourn, Vanessa, Pinilla-Ibarz, Javier, Purkayastha, Das, Sadek, Islam, Saglio, Giuseppe, Shrestha, Alok, White, Brian S, Druker, Brian J

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Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge von Xiong, Zhaoping, Jeon, Minji, Allaway, Robert J., Kang, Jaewoo, Park, Donghyeon, Lee, Jinhyuk, Jeon, Hwisang, Ko, Miyoung, Jiang, Hualiang, Zheng, Mingyue K., Tan, Aik Choon, Guo, Xindi, Dang, Kristen K. K., Tropsha, Alex A., Hecht, Chana, Das, Tirtha K., Carlson, Heather A., Abagyan, Ruben, Guinney, Justin, Schlessinger, Avner, Cagan, Ross

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