Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney von Ransick, Andrew, Lindström, Nils O., Liu, Jing, Zhu, Qin, Guo, Jin-Jin, Alvarado, Gregory F., Kim, Albert D., Black, Hannah G., Kim, Junhyong, McMahon, Andrew P.

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CYCLOPS reveals human transcriptional rhythms in health and disease von Anafi, Ron C., Francey, Lauren J., Hogenesch, John B., Kim, Junhyong

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Challenges and emerging directions in single-cell analysis von Yuan, Guo-Cheng, Cai, Long, Elowitz, Michael, Enver, Tariq, Fan, Guoping, Guo, Guoji, Irizarry, Rafael, Kharchenko, Peter, Kim, Junhyong, Orkin, Stuart, Quackenbush, John, Saadatpour, Assieh, Schroeder, Timm, Shivdasani, Ramesh, Tirosh, Itay

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Comprehensive catalog of dendritically localized mRNA isoforms from sub-cellular sequencing of single mouse neurons von Middleton, Sarah A, Eberwine, James, Kim, Junhyong

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Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets von Miao, Zhen, Balzer, Michael S., Ma, Ziyuan, Liu, Hongbo, Wu, Junnan, Shrestha, Rojesh, Aranyi, Tamas, Kwan, Amy, Kondo, Ayano, Pontoglio, Marco, Kim, Junhyong, Li, Mingyao, Kaestner, Klaus H., Susztak, Katalin

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The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation von Dhillon, Poonam, Park, Jihwan, Hurtado del Pozo, Carmen, Li, Lingzhi, Doke, Tomohito, Huang, Shizheng, Zhao, Juanjuan, Kang, Hyun Mi, Shrestra, Rojesh, Balzer, Michael S., Chatterjee, Shatakshee, Prado, Patricia, Han, Seung Yub, Liu, Hongbo, Sheng, Xin, Dierickx, Pieterjan, Batmanov, Kirill, Romero, Juan P., Prósper, Felipe, Li, Mingyao, Pei, Liming, Kim, Junhyong, Montserrat, Nuria, Susztak, Katalin

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Parallel pathways for recruiting effector proteins determine centromere drive and suppression von Kumon, Tomohiro, Ma, Jun, Akins, R. Brian, Stefanik, Derek, Nordgren, C. Erik, Kim, Junhyong, Levine, Mia T., Lampson, Michael A.

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miRNA Profiling of Magnetic Nanopore-Isolated Extracellular Vesicles for the Diagnosis of Pancreatic Cancer von Ko, Jina, Bhagwat, Neha, Black, Taylor, Yee, Stephanie S, Na, Young-Ji, Fisher, Stephen, Kim, Junhyong, Carpenter, Erica L, Stanger, Ben Z, Issadore, David

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Accounting for technical noise in differential expression analysis of single-cell RNA sequencing data von Jia, Cheng, Hu, Yu, Kelly, Derek, Kim, Junhyong, Li, Mingyao, Zhang, Nancy R

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Molecular Evolution of Drosophila Odorant Receptor Genes von Guo, Sheng, Kim, Junhyong

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Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue von Lovatt, Ditte, Ruble, Brittani K, Lee, Jaehee, Dueck, Hannah, Kim, Tae Kyung, Fisher, Stephen, Francis, Chantal, Spaethling, Jennifer M, Wolf, John A, Grady, M Sean, Ulyanova, Alexandra V, Yeldell, Sean B, Griepenburg, Julianne C, Buckley, Peter T, Kim, Junhyong, Sul, Jai-Yoon, Dmochowski, Ivan J, Eberwine, James

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Astrocyte ethanol exposure reveals persistent and defined calcium response subtypes and associated gene signatures von Kim, Hyun-Bum, Lu, Youtao, Oh, Seonkyung C., Morris, Jacqueline, Miyashiro, Kevin, Kim, Junhyong, Eberwine, James, Sul, Jai-Yoon

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Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH von Torre, Eduardo, Dueck, Hannah, Shaffer, Sydney, Gospocic, Janko, Gupte, Rohit, Bonasio, Roberto, Kim, Junhyong, Murray, John, Raj, Arjun

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RNA: state memory and mediator of cellular phenotype von Kim, Junhyong, Eberwine, James

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PIVOT: platform for interactive analysis and visualization of transcriptomics data von Zhu, Qin, Fisher, Stephen A, Dueck, Hannah, Middleton, Sarah, Khaladkar, Mugdha, Kim, Junhyong

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The purinergic receptor P2X5 regulates inflammasome activity and hyper-multinucleation of murine osteoclasts von Kim, Hyunsoo, Walsh, Matthew C., Takegahara, Noriko, Middleton, Sarah A., Shin, Hong-In, Kim, Junhyong, Choi, Yongwon

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Single-mitochondrion sequencing uncovers distinct mutational patterns and heteroplasmy landscape in mouse astrocytes and neurons von Kadam, Parnika S, Yang, Zijian, Lu, Youtao, Zhu, Hua, Atiyas, Yasemin, Shah, Nishal, Fisher, Stephen, Nordgren, Erik, Kim, Junhyong, Issadore, David, Eberwine, James

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Machine learning helps identify CHRONO as a circadian clock component von Anafi, Ron C, Lee, Yool, Sato, Trey K, Venkataraman, Anand, Ramanathan, Chidambaram, Kavakli, Ibrahim H, Hughes, Michael E, Baggs, Julie E, Growe, Jacqueline, Liu, Andrew C, Kim, Junhyong, Hogenesch, John B

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Genome-wide analyses of exonic copy number variants in a family-based study point to novel autism susceptibility genes von Bucan, Maja, Abrahams, Brett S, Wang, Kai, Glessner, Joseph T, Herman, Edward I, Sonnenblick, Lisa I, Alvarez Retuerto, Ana I, Imielinski, Marcin, Hadley, Dexter, Bradfield, Jonathan P, Kim, Cecilia, Gidaya, Nicole B, Lindquist, Ingrid, Hutman, Ted, Sigman, Marian, Kustanovich, Vlad, Lajonchere, Clara M, Singleton, Andrew, Kim, Junhyong, Wassink, Thomas H, McMahon, William M, Owley, Thomas, Sweeney, John A, Coon, Hilary, Nurnberger, John I, Li, Mingyao, Cantor, Rita M, Minshew, Nancy J, Sutcliffe, James S, Cook, Edwin H, Dawson, Geraldine, Buxbaum, Joseph D, Grant, Struan F A, Schellenberg, Gerard D, Geschwind, Daniel H, Hakonarson, Hakon

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Insertion variants missing in the human reference genome are widespread among human populations von Lee, Young-gun, Lee, Jin-young, Kim, Junhyong, Kim, Young-Joon

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