Structure, Function, and Evolution of Transient and Obligate Protein-Protein Interactions von Mintseris, Julian, Weng, Zhiping, Thornton, Janet

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The BioPlex Network: A Systematic Exploration of the Human Interactome von Huttlin, Edward L., Ting, Lily, Bruckner, Raphael J., Gebreab, Fana, Gygi, Melanie P., Szpyt, John, Tam, Stanley, Zarraga, Gabriela, Colby, Greg, Baltier, Kurt, Dong, Rui, Guarani, Virginia, Vaites, Laura Pontano, Ordureau, Alban, Rad, Ramin, Erickson, Brian K., Wühr, Martin, Chick, Joel, Zhai, Bo, Kolippakkam, Deepak, Mintseris, Julian, Obar, Robert A., Harris, Tim, Artavanis-Tsakonas, Spyros, Sowa, Mathew E., De Camilli, Pietro, Paulo, Joao A., Harper, J. Wade, Gygi, Steven P.

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Large-scale characterization of drug mechanism of action using proteome-wide thermal shift assays von Van Vranken, Jonathan G, Li, Jiaming, Mintseris, Julian, Wei, Ting-Yu, Sniezek, Catherine M, Gadzuk-Shea, Meagan, Gygi, Steven P, Schweppe, Devin K

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Protein-protein docking benchmark version 3.0 von Hwang, Howook, Pierce, Brian, Mintseris, Julian, Janin, Joël, Weng, Zhiping

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Phosphoproteome Analysis of Drosophila melanogaster Embryos von Zhai, Bo, Villén, Judit, Beausoleil, Sean A, Mintseris, Julian, Gygi, Steven P

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A protein-protein docking benchmark von Chen, Rong, Mintseris, Julian, Janin, Joël, Weng, Zhiping

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Prokayrotic Ubiquitin-Like Protein (Pup) Proteome of Mycobacterium tuberculosis von Festa, Richard A, McAllister, Fiona, Pearce, Michael J, Mintseris, Julian, Burns, Kristin E, Gygi, Steven P, Darwin, K. Heran

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Protein-protein docking benchmark 2.0: An update von Mintseris, Julian, Wiehe, Kevin, Pierce, Brian, Anderson, Robert, Chen, Rong, Janin, Joël, Weng, Zhiping

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Are protein–protein interfaces more conserved in sequence than the rest of the protein surface? von Caffrey, Daniel R., Somaroo, Shyamal, Hughes, Jason D., Mintseris, Julian, Huang, Enoch S.

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Transcription Factor Networks in Drosophila melanogaster von Rhee, David Y., Cho, Dong-Yeon, Zhai, Bo, Slattery, Matthew, Ma, Lijia, Mintseris, Julian, Wong, Christina Y., White, Kevin P., Celniker, Susan E., Przytycka, Teresa M., Gygi, Steven P., Obar, Robert A., Artavanis-Tsakonas, Spyros

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High-density chemical cross-linking for modeling protein interactions von Mintseris, Julian, Gygi, Steven P.

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ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5 von Wiehe, Kevin, Pierce, Brian, Mintseris, Julian, Tong, Wei Wei, Anderson, Robert, Chen, Rong, Weng, Zhiping

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The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI von Wiehe, Kevin, Pierce, Brian, Tong, Wei Wei, Hwang, Howook, Mintseris, Julian, Weng, Zhiping

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ZDOCK predictions for the CAPRI challenge von Chen, Rong, Tong, Weiwei, Mintseris, Julian, Li, Li, Weng, Zhiping

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Design of a combinatorial DNA microarray for protein-DNA interaction studies von Mintseris, Julian, Eisen, Michael B

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Structural insights into cytokine cleavage by inflammatory caspase-4 von Devant, Pascal, Dong, Ying, Mintseris, Julian, Ma, Weiyi, Gygi, Steven P., Wu, Hao, Kagan, Jonathan C.

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DPP9 sequesters the C terminus of NLRP1 to repress inflammasome activation von Hollingsworth, L. Robert, Sharif, Humayun, Griswold, Andrew R., Fontana, Pietro, Mintseris, Julian, Dagbay, Kevin B., Paulo, Joao A., Gygi, Steven P., Bachovchin, Daniel A., Wu, Hao

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Improved Monoisotopic Mass Estimation for Deeper Proteome Coverage von Rad, Ramin, Li, Jiaming, Mintseris, Julian, O’Connell, Jeremy, Gygi, Steven P, Schweppe, Devin K

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Integrating statistical pair potentials into protein complex prediction von Mintseris, Julian, Pierce, Brian, Wiehe, Kevin, Anderson, Robert, Chen, Rong, Weng, Zhiping

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A specialized integrin-binding motif enables proTGF-β2 activation by integrin αVβ6 but not αVβ8 von Le, Viet Q, Zhao, Bo, Ramesh, Siddanth, Toohey, Cameron, DeCosta, Adam, Mintseris, Julian, Liu, Xinyue, Gygi, Steven, Springer, Timothy A

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