The model organism as a system: integrating 'omics' data sets von Joyce, Andrew R, Palsson, Bernhard Ø

Volltext

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information von Palsson, Bernhard Ø, Feist, Adam M, Henry, Christopher S, Reed, Jennifer L, Krummenacker, Markus, Joyce, Andrew R, Karp, Peter D, Broadbelt, Linda J, Hatzimanikatis, Vassily

Volltext

RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media von Conrad, Tom M., Frazier, Michael, Joyce, Andrew R., Cho, Byung-Kwan, Knight, Eric M., Lewis, Nathan E., Landick, Robert, Palsson, Bernhard Ø., Gross, Carol A.

Volltext

Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale von Palsson, Bernhard Ø, Herring, Christopher D, Raghunathan, Anu, Honisch, Christiane, Patel, Trina, Applebee, M Kenyon, Joyce, Andrew R, Albert, Thomas J, Blattner, Frederick R, van den Boom, Dirk, Cantor, Charles R

Volltext

Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations von Conrad, Tom M, Joyce, Andrew R, Applebee, M Kenyon, Barrett, Christian L, Xie, Bin, Gao, Yuan, Palsson, Bernhard Ø

Volltext

Systems Approach to Refining Genome Annotation von Reed, Jennifer L., Patel, Trina R., Chen, Keri H., Joyce, Andrew R., Applebee, Margaret K., Herring, Christopher D., Bui, Olivia T., Knight, Eric M., Fong, Stephen S., Palsson, Bernhard O.

Volltext

Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli von JOYCE, Andrew R, REED, Jennifer L, WHITE, Aprilfawn, EDWARDS, Robert, OSTERMAN, Andrei, BABA, Tomoya, MORI, Hirotada, LESELY, Scott A, PALSSON, Bernhard Ø, AGARWALLA, Sanjay

Volltext

Functional and Metabolic Effects of Adaptive Glycerol Kinase (GLPK) Mutants in Escherichia coli von Applebee, M. Kenyon, Joyce, Andrew R., Conrad, Tom M., Pettigrew, Donald W., Palsson, Bernhard Ø.

Volltext

Buprenorphine compared with methadone to treat pregnant women with opioid use disorder: a systematic review and meta-analysis of safety in the mother, fetus and child von Zedler, Barbara K., Mann, Ashley L., Kim, Mimi M., Amick, Halle R., Joyce, Andrew R., Murrelle, E. Lenn, Jones, Hendrée E.

Volltext

Matrix formalism to describe functional states of transcriptional regulatory systems von Gianchandani, Erwin P, Papin, Jason A, Price, Nathan D, Joyce, Andrew R, Palsson, Bernhard O

Volltext

Metabolic Characterization of Escherichia coli Strains Adapted to Growth on Lactate von QIANG HUA, JOYCE, Andrew R, PALSSON, Bernhard Ø, FONG, Stephen S

Volltext

A Swedish Population-based Study of Adverse Birth Outcomes among Pregnant Women Treated with Buprenorphine or Methadone: Preliminary Findings von Wurst, Keele E., Zedler, Barbara K., Joyce, Andrew R., Sasinowski, Maciek, Murrelle, E. Lenn

Volltext

Functional states of the genome-scale Escherichia coli transcriptional regulatory system von Gianchandani, Erwin P, Joyce, Andrew R, Palsson, Bernhard Ø, Papin, Jason A

Volltext

Validation of a Screening Risk Index for Serious Prescription Opioid-Induced Respiratory Depression or Overdose in a US Commercial Health Plan Claims Database von Zedler, Barbara K, Saunders, William B, Joyce, Andrew R, Vick, Catherine C, Murrelle, E Lenn

Volltext

Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains von Hua, Qiang, Joyce, Andrew R., Fong, Stephen S., Palsson, Bernhard Ø.

Volltext

Estimating the reduction in US mortality if cigarettes were largely replaced by e-cigarettes von Lee, Peter N., Fry, John S., Gilliland, Stanley, Campbell, Preston, Joyce, Andrew R.

Volltext

Risk Factors for Serious Prescription Opioid-Induced Respiratory Depression or Overdose: Comparison of Commercially Insured and Veterans Health Affairs Populations von Nadpara, Pramit A, Joyce, Andrew R, Murrelle, E Lenn, Carroll, Nathan W, Carroll, Norman V, Barnard, Marie, Zedler, Barbara K

Volltext

A statistical method for excluding non-variable CpG sites in high-throughput DNA methylation profiling von Meng, Hailong, Joyce, Andrew R, Adkins, Daniel E, Basu, Priyadarshi, Jia, Yankai, Li, Guoya, Sengupta, Tapas K, Zedler, Barbara K, Murrelle, E Lenn, van den Oord, Edwin J C G

Volltext

Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states von Fong, Stephen S, Joyce, Andrew R, Palsson, Bernhard Ø

Volltext

Long-range periodic patterns in microbial genomes indicate significant multi-scale chromosomal organization von Allen, Timothy E, Price, Nathan D, Joyce, Andrew R, Palsson, Bernhard Ø

Volltext