Systematic inference of indirect transcriptional regulation by protein kinases and phosphatases von Madsen, Christian Degnbol, Hein, Jotun, Workman, Christopher T.

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The Exaptation of HERV-H: Evolutionary Analyses Reveal the Genomic Features of Highly Transcribed Elements von Gemmell, Patrick, Hein, Jotun, Katzourakis, Aris

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Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved von Gemmell, Patrick, Hein, Jotun, Katzourakis, Aris

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Autocatalytic Sets and the Origin of Life von Hordijk, Wim, Hein, Jotun, Steel, Mike

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Pleiotropic constraints promote the evolution of cooperation in cellular groups von Bentley, Michael A, Yates, Christian A, Hein, Jotun, Preston, Gail M, Foster, Kevin R

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Frnakenstein: multiple target inverse RNA folding von Lyngsø, Rune B, Anderson, James W J, Sizikova, Elena, Badugu, Amarendra, Hyland, Tomas, Hein, Jotun

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The role of flexibility and conformational selection in the binding promiscuity of PDZ domains von Münz, Márton, Hein, Jotun, Biggin, Philip C

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Using biological networks to search for interacting loci in genome-wide association studies von Emily, Mathieu, Mailund, Thomas, Hein, Jotun, Schauser, Leif, Schierup, Mikkel Heide

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Genome-wide identification of human functional DNA using a neutral indel model von Lunter, Gerton, Ponting, Chris P, Hein, Jotun

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Uncertainty in homology inferences: assessing and improving genomic sequence alignment von Lunter, Gerton, Rocco, Andrea, Mimouni, Naila, Heger, Andreas, Caldeira, Alexandre, Hein, Jotun

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StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees von Novák, Ádám, Miklós, István, Lyngsø, Rune, Hein, Jotun

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Bayesian coestimation of phylogeny and sequence alignment von Lunter, Gerton, Miklós, István, Drummond, Alexei, Jensen, Jens Ledet, Hein, Jotun

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Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison von Mithani, Aziz, Preston, Gail M., Hein, Jotun

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Consequences of Recombination on Traditional Phylogenetic Analysis von Schierup, Mikkel H, Hein, Jotun

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Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs von Herman, Joseph L, Novák, Ádám, Lyngsø, Rune, Szabó, Adrienn, Miklós, István, Hein, Jotun

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The impact of COVID-19 certification mandates on the number of cases of and hospitalizations with COVID-19 in the UK: A difference-in-differences analysis von López-Güell, Kim, Prats-Uribe, Albert, Català, Martí, Prats, Clara, Hein, Jotun, Prieto-Alhambra, Daniel

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A Bayesian approach to the evolution of metabolic networks on a phylogeny von Mithani, Aziz, Preston, Gail M, Hein, Jotun

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Ongoing Recombination in SARS-CoV-2 Revealed through Genealogical Reconstruction von Ignatieva, Anastasia, Hein, Jotun, Jenkins, Paul A

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Recoverability of ancestral recombination graph topologies von Hayman, Elizabeth, Ignatieva, Anastasia, Hein, Jotun

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Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity von Münz, Márton, Lyngsø, Rune, Hein, Jotun, Biggin, Philip C

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