Iron fortification adversely affects the gut microbiome, increases pathogen abundance and induces intestinal inflammation in Kenyan infants von Jaeggi, Tanja, Kortman, Guus A M, Moretti, Diego, Chassard, Christophe, Holding, Penny, Dostal, Alexandra, Boekhorst, Jos, Timmerman, Harro M, Swinkels, Dorine W, Tjalsma, Harold, Njenga, Jane, Mwangi, Alice, Kvalsvig, Jane, Lacroix, Christophe, Zimmermann, Michael B

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Gut microbiome in ADHD and its relation to neural reward anticipation von Aarts, Esther, Ederveen, Thomas H A, Naaijen, Jilly, Zwiers, Marcel P, Boekhorst, Jos, Timmerman, Harro M, Smeekens, Sanne P, Netea, Mihai G, Buitelaar, Jan K, Franke, Barbara, van Hijum, Sacha A F T, Arias Vasquez, Alejandro

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The lactococcal ICE-ome encodes a repertoire of exchangeable traits with potential industrial relevance von van der Els, Simon, Boekhorst, Jos, Bron, Peter A, Kleerebezem, Michiel

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Degenerate target sites mediate rapid primed CRISPR adaptation von Fineran, Peter C., Gerritzen, Matthias J. H., Suárez-Diez, María, Künne, Tim, Boekhorst, Jos, van Hijum, Sacha A. F. T., Staals, Raymond H. J., Brouns, Stan J. J.

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Targeting the Cutaneous Microbiota in Atopic Dermatitis by Coal Tar via AHR-Dependent Induction of Antimicrobial Peptides von Smits, Jos P.H., Ederveen, Thomas H.A., Rikken, Gijs, van den Brink, Noa J.M., van Vlijmen-Willems, Ivonne M.J.J., Boekhorst, Jos, Kamsteeg, Marijke, Schalkwijk, Joost, van Hijum, Sacha A.F.T., Zeeuwen, Patrick L.J.M., van den Bogaard, Ellen H.

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Detection and classification of the integrative conjugative elements of Lactococcus lactis von van der Els, Simon, Sheombarsing, Reshtrie, van Kempen, Thijn, Wels, Michiel, Boekhorst, Jos, Bron, Peter A, Kleerebezem, Michiel

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Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity von Smokvina, Tamara, Wels, Michiel, Polka, Justyna, Chervaux, Christian, Brisse, Sylvain, Boekhorst, Jos, van Hylckama Vlieg, Johan E T, Siezen, Roland J

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Intestinal colonisation patterns in breastfed and formula-fed infants during the first 12 weeks of life reveal sequential microbiota signatures von Timmerman, Harro M., Rutten, Nicole B. M. M., Boekhorst, Jos, Saulnier, Delphine M., Kortman, Guus A. M., Contractor, Nikhat, Kullen, Martin, Floris, Esther, Harmsen, Hermie J. M., Vlieger, Arine M., Kleerebezem, Michiel, Rijkers, Ger T.

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Dietary calcium phosphate strongly impacts gut microbiome changes elicited by inulin and galacto-oligosaccharides consumption von Fuhren, Jori, Schwalbe, Markus, Boekhorst, Jos, Rosch, Christiane, Schols, Henk A., Kleerebezem, Michiel

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Prediction and validation of novel SigB regulon members in Bacillus subtilis and regulon structure comparison to Bacillales members von Yeak, Kah Yen Claire, Boekhorst, Jos, Wels, Michiel, Abee, Tjakko, Wells-Bennik, Marjon H J

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Environmental and maternal factors shaping tonsillar microbiota development in piglets von Fredriksen, Simen, Guan, Xiaonan, Boekhorst, Jos, Molist, Francesc, van Baarlen, Peter, Wells, Jerry M

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Resistome expansion in disease-associated human gut microbiomes von Fredriksen, Simen, de Warle, Stef, van Baarlen, Peter, Boekhorst, Jos, Wells, Jerry M

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Microbiome dynamics of human epidermis following skin barrier disruption von Zeeuwen, Patrick LJM, Boekhorst, Jos, Bogaard, Ellen H van den, Koning, Heleen D de, Kerkhof, Peter MC van de, Saulnier, Delphine M, Swam, Iris I van, Hijum, Sacha AFT van, Kleerebezem, Michiel, Schalkwijk, Joost, Timmerman, Harro M

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Effect of low-iron micronutrient powder (MNP) on the composition of gut microbiota of Bangladeshi children in a high-iron groundwater setting: a randomized controlled trial von Rahman, Sabuktagin, Kortman, Guus A. M., Boekhorst, Jos, Lee, Patricia, Khan, Moududur R., Ahmed, Faruk

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Charting host-microbe co-metabolism in skin aging and application to metagenomics data von Alkema, Wynand, Boekhorst, Jos, Eijlander, Robyn T., Schnittger, Steve, De Gruyter, Fini, Lukovac, Sabina, Schilling, Kurt, Kortman, Guus A. M.

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Complete Resequencing and Reannotation of the Lactobacillus plantarum WCFS1 Genome von Siezen, Roland J, Francke, Christof, Renckens, Bernadet, Boekhorst, Jos, Wels, Michiel, Kleerebezem, Michiel, van Hijum, Sacha A. F. T

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LocateP: genome-scale subcellular-location predictor for bacterial proteins von Zhou, Miaomiao, Boekhorst, Jos, Francke, Christof, Siezen, Roland J

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A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets von Leimena, Milkha M, Ramiro-Garcia, Javier, Davids, Mark, van den Bogert, Bartholomeus, Smidt, Hauke, Smid, Eddy J, Boekhorst, Jos, Zoetendal, Erwin G, Schaap, Peter J, Kleerebezem, Michiel

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Collection of human and environmental data on pesticide use in Europe and Argentina: Field study protocol for the SPRINT project von Silva, Vera, Alaoui, Abdallah, Schlunssen, Vivi, Vested, Anne, Graumans, Martien, van Dael, Maurice, Trevisan, Marco, Suciu, Nicoleta, Mol, Hans, Beekmann, Karsten, Figueiredo, Daniel, Harkes, Paula, Hofman, Jakub, Kandeler, Ellen, Abrantes, Nelson, Campos, Isabel, Martinez, Maria Angeles, Pereira, Joana Luisa, Goossens, Dirk, Gandrass, Juergen, Debler, Freya, Lwanga, Esperanza Huerta, Jonker, Marlot, van Langevelde, Frank, Sorensen, Martin T., Wells, Jerry M., Boekhorst, Jos, Huss, Anke, Mandrioli, Daniele, Sgargi, Daria, Nathanail, Paul, Nathanail, Judith, Tamm, Lucius, Fantke, Peter, Mark, Jennifer, Grovermann, Christian, Frelih-Larsen, Ana, Herb, Irina, Chivers, Charlotte-Anne, Mills, Jane, Alcon, Francisco, Contreras, Josefina, Baldi, Isabelle, Paskovic, Igor, Matjaz, Glavan, Norgaard, Trine, Aparicio, Virginia, Ritsema, Coen J., Geissen, Violette, Scheepers, Paul T. J.

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Maternal Human Milk Oligosaccharide Profile Modulates the Impact of an Intervention with Iron and Galacto-Oligosaccharides in Kenyan Infants von Paganini, Daniela, Uyoga, Mary A, Kortman, Guus A M, Boekhorst, Jos, Schneeberger, Sacha, Karanja, Simon, Hennet, Thierry, Zimmermann, Michael B

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