From command-line bioinformatics to bioGUI von Joppich, Markus, Zimmer, Ralf

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Protective immune trajectories in early viral containment of non-pneumonic SARS-CoV-2 infection von Pekayvaz, Kami, Leunig, Alexander, Kaiser, Rainer, Joppich, Markus, Brambs, Sophia, Janjic, Aleksandar, Popp, Oliver, Nixdorf, Daniel, Fumagalli, Valeria, Schmidt, Nora, Polewka, Vivien, Anjum, Afra, Knottenberg, Viktoria, Eivers, Luke, Wange, Lucas E., Gold, Christoph, Kirchner, Marieluise, Muenchhoff, Maximilian, Hellmuth, Johannes C., Scherer, Clemens, Rubio-Acero, Raquel, Eser, Tabea, Deák, Flora, Puchinger, Kerstin, Kuhl, Niklas, Linder, Andreas, Saar, Kathrin, Tomas, Lukas, Schulz, Christian, Wieser, Andreas, Enard, Wolfgang, Kroidl, Inge, Geldmacher, Christof, von Bergwelt-Baildon, Michael, Keppler, Oliver T., Munschauer, Mathias, Iannacone, Matteo, Zimmer, Ralf, Mertins, Philipp, Hubner, Norbert, Hoelscher, Michael, Massberg, Steffen, Stark, Konstantin, Nicolai, Leo

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Self-sustaining IL-8 loops drive a prothrombotic neutrophil phenotype in severe COVID-19 von Kaiser, Rainer, Leunig, Alexander, Pekayvaz, Kami, Popp, Oliver, Joppich, Markus, Polewka, Vivien, Escaig, Raphael, Anjum, Afra, Hoffknecht, Marie-Louise, Gold, Christoph, Brambs, Sophia, Engel, Anouk, Stockhausen, Sven, Knottenberg, Viktoria, Titova, Anna, Haji, Mohamed, Scherer, Clemens, Muenchhoff, Maximilian, Hellmuth, Johannes C., Saar, Kathrin, Schubert, Benjamin, Hilgendorff, Anne, Schulz, Christian, Kaeaeb, Stefan, Zimmer, Ralf, Huebner, Norbert, Massberg, Steffen, Mertins, Philipp, Nicolai, Leo, Stark, Konstantin

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Resident and recruited macrophages differentially contribute to cardiac healing after myocardial ischemia von Weinberger, Tobias, Denise, Messerer, Joppich, Markus, Fischer, Maximilian, Garcia Rodriguez, Clarisabel, Kumaraswami, Konda, Wimmler, Vanessa, Ablinger, Sonja, Räuber, Saskia, Fang, Jiahui, Liu, Lulu, Liu, Wing Han, Winterhalter, Julia, Lichti, Johannes, Thomas, Lukas, Esfandyari, Dena, Percin, Guelce, Matin, Sandra, Hidalgo, Andrés, Waskow, Claudia, Engelhardt, Stefan, Todica, Andrei, Zimmer, Ralf, Pridans, Clare, Gomez Perdiguero, Elisa, Schulz, Christian

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Tryptophan usage by Helicobacter pylori differs among strains von Rojas-Rengifo, Diana F., Ulloa-Guerrero, Cindy P., Joppich, Markus, Haas, Rainer, del Pilar Delgado, Maria, Jaramillo, Carlos, Jiménez-Soto, Luisa F.

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SEQU-INTO: Early detection of impurities, contamination and off-targets (ICOs) in long read/MinION sequencing von Joppich, Markus, Olenchuk, Margaryta, Mayer, Julia M., Emslander, Quirin, Jimenez-Soto, Luisa F., Zimmer, Ralf

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Integrative bioinformatics applications for complex human disease contexts von Joppich, Markus

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Vascular neutrophilic inflammation and immunothrombosis distinguish severe COVID‐19 from influenza pneumonia von Nicolai, Leo, Leunig, Alexander, Brambs, Sophia, Kaiser, Rainer, Joppich, Markus, Hoffknecht, Marie‐Louise, Gold, Christoph, Engel, Anouk, Polewka, Vivien, Muenchhoff, Maximilian, Hellmuth, Johannes C., Ruhle, Adrian, Ledderose, Stephan, Weinberger, Tobias, Schulz, Heiko, Scherer, Clemens, Rudelius, Martina, Zoller, Michael, Keppler, Oliver T., Zwißler, Bernhard, Bergwelt‐Baildon, Michael, Kääb, Stefan, Zimmer, Ralf, Bülow, Roman D., Stillfried, Saskia, Boor, Peter, Massberg, Steffen, Pekayvaz, Kami, Stark, Konstantin

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Immunothrombotic Signatures of Resident and Circulating Immune Cells in Human Infective Endocarditis Revealed By Multi-Omic Profiling von Kaiser, Rainer, Joppich, Markus, Droste, Augustin, Knottenberg, Viktoria, Akhalkatsi, Anastassia, Saha, Shekhar, Hagl, Christian, Escaig, Raphael, Massberg, Steffen, Draenert, Rika, Stark, Konstantin, Nicolai, Leo, Pekayvaz, Kami

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Cell-free production of personalized therapeutic phages targeting multidrug-resistant bacteria von Emslander, Quirin, Vogele, Kilian, Braun, Peter, Stender, Jana, Willy, Christian, Joppich, Markus, Hammerl, Jens A., Abele, Miriam, Meng, Chen, Pichlmair, Andreas, Ludwig, Christina, Bugert, Joachim J., Simmel, Friedrich C., Westmeyer, Gil G.

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Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammation von Pekayvaz, Kami, Gold, Christoph, Hoseinpour, Parandis, Engel, Anouk, Martinez-Navarro, Alejandro, Eivers, Luke, Coletti, Raffaele, Joppich, Markus, Dionísio, Flávio, Kaiser, Rainer, Tomas, Lukas, Janjic, Aleksandar, Knott, Maximilian, Mehari, Fitsumbirhan, Polewka, Vivien, Kirschner, Megan, Boda, Annegret, Nicolai, Leo, Schulz, Heiko, Titova, Anna, Kilani, Badr, Lorenz, Michael, Fingerle-Rowson, Günter, Bucala, Richard, Enard, Wolfgang, Zimmer, Ralf, Weber, Christian, Libby, Peter, Schulz, Christian, Massberg, Steffen, Stark, Konstantin

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Multiomic analyses uncover immunological signatures in acute and chronic coronary syndromes von Pekayvaz, Kami, Losert, Corinna, Knottenberg, Viktoria, Gold, Christoph, van Blokland, Irene V., Oelen, Roy, Groot, Hilde E., Benjamins, Jan Walter, Brambs, Sophia, Kaiser, Rainer, Gottschlich, Adrian, Hoffmann, Gordon Victor, Eivers, Luke, Martinez-Navarro, Alejandro, Bruns, Nils, Stiller, Susanne, Akgöl, Sezer, Yue, Keyang, Polewka, Vivien, Escaig, Raphael, Joppich, Markus, Janjic, Aleksandar, Popp, Oliver, Kobold, Sebastian, Petzold, Tobias, Zimmer, Ralf, Enard, Wolfgang, Saar, Kathrin, Mertins, Philipp, Huebner, Norbert, van der Harst, Pim, Franke, Lude H., van der Wijst, Monique G. P., Massberg, Steffen, Heinig, Matthias, Nicolai, Leo, Stark, Konstantin

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Multiomic analyses uncover immunological signatures in acute and chronic coronary syndromes von Pekayvaz, Kami, Losert, Corinna, Knottenberg, Viktoria, Gold, Christoph, van Blokland, Irene V, Oelen, Roy, Groot, Hilde E, Benjamins, Jan Walter, Brambs, Sophia, Kaiser, Rainer, Gottschlich, Adrian, Hoffmann, Gordon Victor, Eivers, Luke, Martinez-Navarro, Alejandro, Bruns, Nils, Stiller, Susanne, Akgöl, Sezer, Yue, Keyang, Polewka, Vivien, Escaig, Raphael, Joppich, Markus, Janjic, Aleksandar, Popp, Oliver, Kobold, Sebastian, Petzold, Tobias, Zimmer, Ralf, Enard, Wolfgang, Saar, Kathrin, Mertins, Philipp, Huebner, Norbert, van der Harst, Pim, Franke, Lude H, van der Wijst, Monique G.P, Massberg, Steffen, Heinig, Matthias, Nicolai, Leo, Stark, Konstantin

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Resident and recruited macrophages differentially contribute to cardiac healing after myocardial ischemia von Weinberger, Tobias, Denise, Messerer, Joppich, Markus, Fischer, Maximilian, Garcia Rodriguez, Clarisabel, Kumaraswami, Konda, Wimmler, Vanessa, Ablinger, Sonja, Räuber, Saskia, Fang, Jiahui, Liu, Lulu, Liu, Wing Han, Winterhalter, Julia, Lichti, Johannes, Thomas, Lukas, Esfandyari, Dena, Percin, Guelce, Matin, Sandra, Hidalgo, Andrés, Waskow, Claudia, Engelhardt, Stefan, Todica, Andrei, Zimmer, Ralf, Pridans, Clare, Gomez Perdiguero, Elisa, Schulz, Christian

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Collecting SARS-CoV-2 Encoded miRNAs via Text Mining von Schubö, Alexandra, Hadziahmetovic, Armin, Joppich, Markus, Zimmer, Ralf

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Resident and recruited macrophages differentially contribute to cardiac healing after myocardial ischemia von Weinberger, Tobias, Messerer, Denise, Joppich, Markus, Fischer, Max, Garcia, Clarisabel, Kumaraswami, Konda, Wimmler, Vanessa, Ablinger, Sonja, Räuber, Saskia, Fang, Jiahui, Liu, Lulu, Liu, Wing Han, Winterhalter, Julia, Lichti, Johannes, Tomas, Lukas, Esfandyari, Dena, Percin, Guelce, Salamanca, Sandra Martin, Hidalgo, Andres, Waskow, Claudia, Engelhardt, Stefan, Todica, Andrei, Zimmer, Ralf, Pridans, Clare, Gomez-Perdiguero, Elisa, Schulz, Christian

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PLO(SC)²: Plots and Scripts for scRNA-seq analysis von Joppich, Markus

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Peripheral priming induces plastic transcriptomic and proteomic responses in circulating neutrophils required for pathogen containment von Kaiser, Rainer, Gold, Christoph, Joppich, Markus, Loew, Quentin, Akhalkatsi, Anastassia, Mueller, Tonina T, Offensperger, Felix, Droste Zu Senden, Augustin, Popp, Oliver, di Fina, Lea, Knottenberg, Viktoria, Martinez-Navarro, Alejandro, Eivers, Luke, Anjum, Afra, Escaig, Raphael, Bruns, Nils, Briem, Eva, Dewender, Robin, Muraly, Abhinaya, Akgöl, Sezer, Ferraro, Bartolo, Hoeflinger, Jonathan K L, Polewka, Vivien, Khaled, Najib Ben, Allgeier, Julian, Tiedt, Steffen, Dichgans, Martin, Engelmann, Bernd, Enard, Wolfgang, Mertins, Philipp, Hubner, Norbert, Weckbach, Ludwig, Zimmer, Ralf, Massberg, Steffen, Stark, Konstantin, Nicolai, Leo, Pekayvaz, Kami

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sequ-into demo/test data von Joppich, Markus

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sequ-into demo/test data von Joppich, Markus

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