Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM von Herreros, D., Krieger, J. M., Fonseca, Y., Conesa, P., Harastani, M., Vuillemot, R., Hamitouche, I., Serrano Gutiérrez, R., Gragera, M., Melero, R., Jonic, S., Carazo, J. M., Sorzano, C. O. S.

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Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy von Sorzano, C. O. S., Jiménez, A., Mota, J., Vilas, J. L., Maluenda, D., Martínez, M., Ramírez-Aportela, E., Majtner, T., Segura, J., Sánchez-García, R., Rancel, Y., del Caño, L., Conesa, P., Melero, R., Jonic, S., Vargas, J., Cazals, F., Freyberg, Z., Krieger, J., Bahar, I., Marabini, R., Carazo, J. M.

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3DEM Loupe: Analysis of macromolecular dynamics using structures from electron microscopy von Nogales-Cadenas, R, Jonic, S, Tama, F, Arteni, A A, Tabas-Madrid, D, Vázquez, M, Pascual-Montano, A, Sorzano, C O S

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FASTDEF: Fast defocus and astigmatism estimation for high-throughput transmission electron microscopy von Vargas, J., Otón, J., Marabini, R., Jonic, S., de la Rosa-Trevín, J.M., Carazo, J.M., Sorzano, C.O.S.

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Local analysis of strains and rotations for macromolecular electron microscopy maps von Sorzano, C.O.S., Martín-Ramos, A., Prieto, F., Melero, R., Martín-Benito, J., Jonic, S., Navas-Calvente, J., Vargas, J., Otón, J., Abrishami, V., de la Rosa-Trevín, J.M., Gómez-Blanco, J., Vilas, J.L., Marabini, R., Carazo, J.M.

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Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps von Si, Dong, He, Jing

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Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function von Sorzano, C.O.S., Jonic, S., Núñez-Ramírez, R., Boisset, N., Carazo, J.M.

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Virilization of the Broad Line Region in Active Galactic Nuclei—connection between shifts and widths of broad emission lines von Jonic, S, Kovacevic-dojcinovic, J, Ilic, D, Popovic, L C

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Radiation-Induced Synthesis and Cryo-TEM Characterization of Silver Nanoshells on Linoleate Spherical Micelles von Attia, J, Rémita, S, Jonic, S, Lacaze, E, Fauré, M.-C, Larquet, E, Goldmann, M

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Understanding the conformational landscape of a protein complex from cryo-EM and mass spectrometry data von Vuillemot, R., Valimehr, S., Sethi, A., Kazemi, M, Jonic, S., Rouiller, I.

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Denoising of high-resolution single-particle electron-microscopy density maps by their approximation using three-dimensional Gaussian functions von Jonić, S., Vargas, J., Melero, R., Gómez-Blanco, J., Carazo, J.M., Sorzano, C.O.S.

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3D electron microscopy of biological nanomachines: principles and applications von Sorzano, C O S, Jonic, S, Cottevieille, M, Larquet, E, Boisset, N, Marco, S

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ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation von Jiménez de la Morena, J., Conesa, P., Fonseca, Y.C., de Isidro-Gómez, F.P., Herreros, D., Fernández-Giménez, E., Strelak, D., Moebel, E., Buchholz, T.O., Jug, F., Martinez-Sanchez, A., Harastani, M., Jonic, S., Conesa, J.J., Cuervo, A., Losana, P., Sánchez, I., Iceta, M., del Cano, L., Gragera, M., Melero, R., Sharov, G., Castaño-Díez, D., Koster, A., Piccirillo, J.G., Vilas, J.L., Otón, J., Marabini, R., Sorzano, C.O.S., Carazo, J.M.

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Comparison of single-particle analysis and electron tomography approaches: an overview von JONIĆ, S, SORZANO, C.O.S, BOISSET, N

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Hybrid Biomolecular Modeling

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On the nature of the Be star HR 7409 (7 Vul) von Vennes, S., Kawka, A., Jonić, S., Pirković, I., Iliev, L., Kubát, J., Šlechta, M., Németh, P., Kraus, M.

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On the nature of the Be star HR7409 (7Vul) von Vennes, S, Kawka, A, Jonic, S, Pirkovic, I, Iliev, L, Kubát, J, Slechta, M, Németh, P, Kraus, M

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Spectral signal-to-noise ratio and resolution assessment of 3D reconstructions von Unser, M., Sorzano, C.O.S., Thévenaz, P., Jonić, S., El-Bez, C., De Carlo, S., Conway, J.F., Trus, B.L.

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A multiresolution approach to orientation assignment in 3D electron microscopy of single particles von Sorzano, C.O.S., Jonić, S., El-Bez, C., Carazo, J.M., De Carlo, S., Thévenaz, P., Unser, M.

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Insulin induces cristae remodeling by decreasing complex I and increasing UCP1 expression in rat brown adipose tissue von Golic, Igor, Markelic, Milica, Velickovic, Ksenija, Jankovic, Aleksandra, Stancic, Ana, Vucetic, Milica, Otasevic, Vesna, Buzadzic, Biljana, Korac, Bato, Jonic, Slavica, Korac, Aleksandra

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