Setting the standards for machine learning in biology von Jones, David T.

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Pilocytic astrocytoma: pathology, molecular mechanisms and markers von Collins, V. Peter, Jones, David T. W., Giannini, Caterina

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The PSIPRED Protein Analysis Workbench: 20 years on von Buchan, Daniel W A, Jones, David T

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Machine learning workflows to estimate class probabilities for precision cancer diagnostics on DNA methylation microarray data von Maros, Máté E., Capper, David, Jones, David T. W., Hovestadt, Volker, von Deimling, Andreas, Pfister, Stefan M., Benner, Axel, Zucknick, Manuela, Sill, Martin

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Failure to demonstrate efficacy of aducanumab: An analysis of the EMERGE and ENGAGE trials as reported by Biogen, December 2019 von Knopman, David S., Jones, David T., Greicius, Michael D.

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Polymorphous low-grade neuroepithelial tumor of the young (PLNTY): an epileptogenic neoplasm with oligodendroglioma-like components, aberrant CD34 expression, and genetic alteratio... von Huse, Jason T., Snuderl, Matija, Jones, David T. W., Brathwaite, Carole D., Altman, Nolan, Lavi, Ehud, Saffery, Richard, Sexton-Oates, Alexandra, Blumcke, Ingmar, Capper, David, Karajannis, Matthias A., Benayed, Ryma, Chavez, Lukas, Thomas, Cheddhi, Serrano, Jonathan, Borsu, Laetitia, Ladanyi, Marc, Rosenblum, Marc K.

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Next-generation sequencing in routine brain tumor diagnostics enables an integrated diagnosis and identifies actionable targets von Sahm, Felix, Schrimpf, Daniel, Jones, David T. W., Meyer, Jochen, Kratz, Annekathrin, Reuss, David, Capper, David, Koelsche, Christian, Korshunov, Andrey, Wiestler, Benedikt, Buchhalter, Ivo, Milde, Till, Selt, Florian, Sturm, Dominik, Kool, Marcel, Hummel, Manuela, Bewerunge-Hudler, Melanie, Mawrin, Christian, Schüller, Ulrich, Jungk, Christine, Wick, Antje, Witt, Olaf, Platten, Michael, Herold-Mende, Christel, Unterberg, Andreas, Pfister, Stefan M., Wick, Wolfgang, von Deimling, Andreas

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Transmembrane protein topology prediction using support vector machines von Nugent, Timothy, Jones, David T

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Integrated analysis of pediatric glioblastoma reveals a subset of biologically favorable tumors with associated molecular prognostic markers von Korshunov, Andrey, Ryzhova, Marina, Hovestadt, Volker, Bender, Sebastian, Sturm, Dominik, Capper, David, Meyer, Jochen, Schrimpf, Daniel, Kool, Marcel, Northcott, Paul A., Zheludkova, Olga, Milde, Till, Witt, Olaf, Kulozik, Andreas E., Reifenberger, Guido, Jabado, Nada, Perry, Arie, Lichter, Peter, von Deimling, Andreas, Pfister, Stefan M., Jones, David T. W.

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Global epigenetic profiling identifies methylation subgroups associated with recurrence-free survival in meningioma von Olar, Adriana, Wani, Khalida M., Wilson, Charmaine D., Zadeh, Gelareh, DeMonte, Franco, Jones, David T. W., Pfister, Stefan M., Sulman, Erik P., Aldape, Kenneth D.

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Deep learning extends de novo protein modelling coverage of genomes using iteratively predicted structural constraints von Greener, Joe G., Kandathil, Shaun M., Jones, David T.

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ATRX and IDH1-R132H immunohistochemistry with subsequent copy number analysis and IDH sequencing as a basis for an “integrated” diagnostic approach for adult astrocytoma, oligodend... von Reuss, David E., Sahm, Felix, Schrimpf, Daniel, Wiestler, Benedikt, Capper, David, Koelsche, Christian, Schweizer, Leonille, Korshunov, Andrey, Jones, David T. W., Hovestadt, Volker, Mittelbronn, Michel, Schittenhelm, Jens, Herold-Mende, Christel, Unterberg, Andreas, Platten, Michael, Weller, Michael, Wick, Wolfgang, Pfister, Stefan M., von Deimling, Andreas

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De novo structure prediction of globular proteins aided by sequence variation-derived contacts von Kosciolek, Tomasz, Jones, David T

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Histologically distinct neuroepithelial tumors with histone 3 G34 mutation are molecularly similar and comprise a single nosologic entity von Korshunov, Andrey, Capper, David, Reuss, David, Schrimpf, Daniel, Ryzhova, Marina, Hovestadt, Volker, Sturm, Dominik, Meyer, Jochen, Jones, Chris, Zheludkova, Olga, Kumirova, Ella, Golanov, Andrey, Kool, Marcel, Schüller, Ulrich, Mittelbronn, Michel, Hasselblatt, Martin, Schittenhelm, Jens, Reifenberger, Guido, Herold-Mende, Christel, Lichter, Peter, von Deimling, Andreas, Pfister, Stefan M., Jones, David T. W.

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MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins von Jones, David T, Singh, Tanya, Kosciolek, Tomasz, Tetchner, Stuart

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Methylation-based classification of benign and malignant peripheral nerve sheath tumors von Röhrich, Manuel, Koelsche, Christian, Schrimpf, Daniel, Capper, David, Sahm, Felix, Kratz, Annekathrin, Reuss, Jana, Hovestadt, Volker, Jones, David T. W., Bewerunge-Hudler, Melanie, Becker, Albert, Weis, Joachim, Mawrin, Christian, Mittelbronn, Michel, Perry, Arie, Mautner, Victor-Felix, Mechtersheimer, Gunhild, Hartmann, Christian, Okuducu, Ali Fuat, Arp, Mirko, Seiz-Rosenhagen, Marcel, Hänggi, Daniel, Heim, Stefanie, Paulus, Werner, Schittenhelm, Jens, Ahmadi, Rezvan, Herold-Mende, Christel, Unterberg, Andreas, Pfister, Stefan M., von Deimling, Andreas, Reuss, David E.

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Adult IDH wild type astrocytomas biologically and clinically resolve into other tumor entities von Reuss, David E., Kratz, Annekathrin, Sahm, Felix, Capper, David, Schrimpf, Daniel, Koelsche, Christian, Hovestadt, Volker, Bewerunge-Hudler, Melanie, Jones, David T. W., Schittenhelm, Jens, Mittelbronn, Michel, Rushing, Elisabeth, Simon, Matthias, Westphal, Manfred, Unterberg, Andreas, Platten, Michael, Paulus, Werner, Reifenberger, Guido, Tonn, Joerg-Christian, Aldape, Kenneth, Pfister, Stefan M., Korshunov, Andrey, Weller, Michael, Herold-Mende, Christel, Wick, Wolfgang, Brandner, Sebastian, von Deimling, Andreas

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Improving the accuracy of transmembrane protein topology prediction using evolutionary information von Jones, David T.

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Practical implementation of DNA methylation and copy-number-based CNS tumor diagnostics: the Heidelberg experience von Capper, David, Stichel, Damian, Sahm, Felix, Jones, David T. W., Schrimpf, Daniel, Sill, Martin, Schmid, Simone, Hovestadt, Volker, Reuss, David E., Koelsche, Christian, Reinhardt, Annekathrin, Wefers, Annika K., Huang, Kristin, Sievers, Philipp, Ebrahimi, Azadeh, Schöler, Anne, Teichmann, Daniel, Koch, Arend, Hänggi, Daniel, Unterberg, Andreas, Platten, Michael, Wick, Wolfgang, Witt, Olaf, Milde, Till, Korshunov, Andrey, Pfister, Stefan M., von Deimling, Andreas

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Aberrant patterns of H3K4 and H3K27 histone lysine methylation occur across subgroups in medulloblastoma von Dubuc, Adrian M., Remke, Marc, Korshunov, Andrey, Northcott, Paul A., Zhan, Shing H., Mendez-Lago, Maria, Kool, Marcel, Jones, David T. W., Unterberger, Alexander, Morrissy, A. Sorana, Shih, David, Peacock, John, Ramaswamy, Vijay, Rolider, Adi, Wang, Xin, Witt, Hendrik, Hielscher, Thomas, Hawkins, Cynthia, Vibhakar, Rajeev, Croul, Sidney, Rutka, James T., Weiss, William A., Jones, Steven J. M., Eberhart, Charles G., Marra, Marco A., Pfister, Stefan M., Taylor, Michael D.

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