HIV-1 variants are archived throughout infection and persist in the reservoir von Brooks, Kelsie, Jones, Bradley R, Dilernia, Dario A, Wilkins, Daniel J, Claiborne, Daniel T, McInally, Samantha, Gilmour, Jill, Kilembe, William, Joy, Jeffrey B, Allen, Susan A, Brumme, Zabrina L, Hunter, Eric

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Structural Factors Controlling the Self-Assembly of Columnar Liquid Crystals von Foster, E. Johan, Jones, R. Bradley, Lavigueur, Christine, Williams, Vance E

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HIV reservoirs are dominated by genetically younger and clonally enriched proviruses von Kinloch, Natalie N, Shahid, Aniqa, Dong, Winnie, Kirkby, Don, Jones, Bradley R, Beelen, Charlotte J, MacMillan, Daniel, Lee, Guinevere Q, Mota, Talia M, Sudderuddin, Hanwei, Barad, Evan, Harris, Marianne, Brumme, Chanson J, Jones, R Brad, Brockman, Mark A, Joy, Jeffrey B, Brumme, Zabrina L

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HIV proviral genetic diversity, compartmentalization and inferred dynamics in lung and blood during long-term suppressive antiretroviral therapy von Shahid, Aniqa, Jones, Bradley R, Yang, Julia S. W, Dong, Winnie, Shaipanich, Tawimas, Donohoe, Kathryn, Brumme, Chanson J, Joy, Jeffrey B, Leung, Janice M, Brumme, Zabrina L

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ANGES: reconstructing ANcestral GEnomeS maps von JONES, Bradley R, RAJARAMAN, Ashok, TANNIER, Eric, CHAUVE, Cedric

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Proviral Turnover During Untreated HIV Infection Is Dynamic and Variable Between Hosts, Impacting Reservoir Composition on ART von Brooks, Kelsie, Omondi, F Harrison, Liang, Richard H, Sudderuddin, Hanwei, Jones, Bradley R, Joy, Jeffrey B, Brumme, Chanson J, Hunter, Eric, Brumme, Zabrina L

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Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data von Wang, Li-Gen, Lam, Tommy Tsan-Yuk, Xu, Shuangbin, Dai, Zehan, Zhou, Lang, Feng, Tingze, Guo, Pingfan, Dunn, Casey W, Jones, Bradley R, Bradley, Tyler, Zhu, Huachen, Guan, Yi, Jiang, Yong, Yu, Guangchuang

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HIV Proviral Burden, Genetic Diversity, and Dynamics in Viremic Controllers Who Subsequently Initiated Suppressive Antiretroviral Therapy von Omondi, F Harrison, Sudderuddin, Hanwei, Shahid, Aniqa, Kinloch, Natalie N, Jones, Bradley R, Miller, Rachel L, Tsai, Olivia, MacMillan, Daniel, Trocha, Alicja, Brockman, Mark A, Brumme, Chanson J, Joy, Jeffrey B, Liang, Richard, Walker, Bruce D, Brumme, Zabrina L

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Longitudinal within-host evolution of HIV Nef-mediated CD4, HLA and SERINC5 downregulation activity: a case study von Sudderuddin, Hanwei, Kinloch, Natalie N, Jin, Steven W, Miller, Rachel L, Jones, Bradley R, Brumme, Chanson J, Joy, Jeffrey B, Brockman, Mark A, Brumme, Zabrina L

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Tree shape‐based approaches for the comparative study of cophylogeny von Avino, Mariano, Ng, Garway T., He, Yiying, Renaud, Mathias S., Jones, Bradley R., Poon, Art F. Y.

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Inferring Human Immunodeficiency Virus 1 Proviral Integration Dates With Bayesian Inference von Jones, Bradley R, Joy, Jeffrey B

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"Community 101 for researchers": an online training program to build capacity for ethical community-engaged research with Native Hawaiians and Pacific Islanders von Chung-Do, Jane J, Scott, Samantha Keaulana, Jones, Bradley R, Look, Mele A, Taira, Deborah A, Palafox, Neal A, Farrar, Kamahanahokulani, Mau, Marjorie K Leimomi M

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Phylogenetic approach to recover integration dates of latent HIV sequences within-host von Jones, Bradley R., Kinloch, Natalie N., Horacsek, Joshua, Ganase, Bruce, Harris, Marianne, Harrigan, P. Richard, Jones, R. Brad, Brockman, Mark A., Joy, Jeffrey B., Poon, Art F. Y., Brumme, Zabrina L.

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HIV Diversity and Genetic Compartmentalization in Blood and Testes during Suppressive Antiretroviral Therapy von Miller, Rachel L, Ponte, Rosalie, Jones, Bradley R, Kinloch, Natalie N, Omondi, Fredrick H, Jenabian, Mohammad-Ali, Dupuy, Franck P, Fromentin, Remi, Brassard, Pierre, Mehraj, Vikram, Chomont, Nicolas, Poon, Art F Y, Joy, Jeffrey B, Brumme, Zabrina L, Routy, Jean-Pierre

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The replication-competent HIV reservoir is a genetically restricted, younger subset of the overall pool of HIV proviruses persisting during therapy, which is highly genetically sta... von Shahid, Aniqa, MacLennan, Signe, Jones, Bradley R, Sudderuddin, Hanwei, Dang, Zhong, Cobarrubias, Kyle, Duncan, Maggie C, Kinloch, Natalie N, Dapp, Michael J, Archin, Nancie M, Fischl, Margaret A, Ofotokun, Igho, Adimora, Adaora, Gange, Stephen, Aouizerat, Bradley, Kuniholm, Mark H, Kassaye, Seble, Mullins, James I, Goldstein, Harris, Joy, Jeffrey B, Anastos, Kathryn, Brumme, Zabrina L

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node.dating: dating ancestors in phylogenetic trees in R von Jones, Bradley R, Poon, Art F Y

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Genetic complexity in the replication-competent latent HIV reservoir increases with untreated infection duration in infected youth von Brumme, Zabrina L, Sudderuddin, Hanwei, Ziemniak, Carrie, Luzuriaga, Katherine, Jones, Bradley R, Joy, Jeffrey B, Cunningham, Coleen K, Greenough, Thomas, Persaud, Deborah

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Genetic Diversity, Compartmentalization, and Age of HIV Proviruses Persisting in CD4 + T Cell Subsets during Long-Term Combination Antiretroviral Therapy von Jones, Bradley R, Miller, Rachel L, Kinloch, Natalie N, Tsai, Olivia, Rigsby, Hawley, Sudderuddin, Hanwei, Shahid, Aniqa, Ganase, Bruce, Brumme, Chanson J, Harris, Marianne, Poon, Art F Y, Brockman, Mark A, Fromentin, Rémi, Chomont, Nicolas, Joy, Jeffrey B, Brumme, Zabrina L

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Iatrogenic type A aortic dissection during idiopathic ventricular tachycardia ablation von Yeshwant, Srinath C., Tsai, Mitchell H., Jones, Bradley R., Hamlin, Mark P., Bensimhon, Ariel D., Lustgarten, Daniel L.

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Continuous Liquid Vapor Reactions Part 2: Asymmetric Hydroformylation with Rhodium-Bisdiazaphos Catalysts in a Vertical Pipes-in-Series Reactor von Abrams, M. Leigh, Buser, Jonas Y, Calvin, Joel R, Johnson, Martin D, Jones, Bradley R, Lambertus, Gordon, Landis, Clark R, Martinelli, Joseph R, May, Scott A, McFarland, Adam D, Stout, James R

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