Mutational and putative neoantigen load predict clinical benefit of adoptive T cell therapy in melanoma von Lauss, Martin, Donia, Marco, Harbst, Katja, Andersen, Rikke, Mitra, Shamik, Rosengren, Frida, Salim, Maryem, Vallon-Christersson, Johan, Törngren, Therese, Kvist, Anders, Ringnér, Markus, Svane, Inge Marie, Jönsson, Göran

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Comprehensive molecular comparison of BRCA1 hypermethylated and BRCA1 mutated triple negative breast cancers von Glodzik, Dominik, Bosch, Ana, Hartman, Johan, Aine, Mattias, Vallon-Christersson, Johan, Reuterswärd, Christel, Karlsson, Anna, Mitra, Shamik, Niméus, Emma, Holm, Karolina, Häkkinen, Jari, Hegardt, Cecilia, Saal, Lao H., Larsson, Christer, Malmberg, Martin, Rydén, Lisa, Ehinger, Anna, Loman, Niklas, Kvist, Anders, Ehrencrona, Hans, Nik-Zainal, Serena, Borg, Åke, Staaf, Johan

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Regulatory networks and 5′ partner usage of miRNA host gene fusions in breast cancer von Hafstað, Völundur, Søkilde, Rolf, Häkkinen, Jari, Larsson, Malin, Vallon‐Christersson, Johan, Rovira, Carlos, Persson, Helena

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Analysis of fusion transcripts indicates widespread deregulation of snoRNAs and their host genes in breast cancer von Persson, Helena, Søkilde, Rolf, Häkkinen, Jari, Vallon‐Christersson, Johan, Mitelman, Felix, Borg, Åke, Höglund, Mattias, Rovira, Carlos

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The mutational landscape of the SCAN‐B real‐world primary breast cancer transcriptome von Brueffer, Christian, Gladchuk, Sergii, Winter, Christof, Vallon‐Christersson, Johan, Hegardt, Cecilia, Häkkinen, Jari, George, Anthony M, Chen, Yilun, Ehinger, Anna, Larsson, Christer, Loman, Niklas, Malmberg, Martin, Rydén, Lisa, Borg, Åke, Saal, Lao H

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Association between breast cancer risk and disease aggressiveness: Characterizing underlying gene expression patterns von Ugalde‐Morales, Emilio, Grassmann, Felix, Humphreys, Keith, Li, Jingmei, Eriksson, Mikael, Tobin, Nicholas P., Borg, Åke, Vallon‐Christersson, Johan, Hall, Per, Czene, Kamila

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Tumor genetic heterogeneity analysis of chronic sun‐damaged melanoma von Sanna, Adriana, Harbst, Katja, Johansson, Iva, Christensen, Gustav, Lauss, Martin, Mitra, Shamik, Rosengren, Frida, Häkkinen, Jari, Vallon‐Christersson, Johan, Olsson, Håkan, Ingvar, Åsa, Isaksson, Karolin, Ingvar, Christian, Nielsen, Kari, Jönsson, Göran

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Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios von Staaf, Johan, Vallon-Christersson, Johan, Lindgren, David, Juliusson, Gunnar, Rosenquist, Richard, Höglund, Mattias, Borg, Ake, Ringnér, Markus

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Tertiary lymphoid structures improve immunotherapy and survival in melanoma von Cabrita, Rita, Lauss, Martin, Sanna, Adriana, Donia, Marco, Skaarup Larsen, Mathilde, Mitra, Shamik, Johansson, Iva, Phung, Bengt, Harbst, Katja, Vallon-Christersson, Johan, van Schoiack, Alison, Lövgren, Kristina, Warren, Sarah, Jirström, Karin, Olsson, Håkan, Pietras, Kristian, Ingvar, Christian, Isaksson, Karolin, Schadendorf, Dirk, Schmidt, Henrik, Bastholt, Lars, Carneiro, Ana, Wargo, Jennifer A., Svane, Inge Marie, Jönsson, Göran

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Author Correction: Mutational and putative neoantigen load predict clinical benefit of adoptive T cell therapy in melanoma von Lauss, Martin, Donia, Marco, Harbst, Katja, Andersen, Rikke, Mitra, Shamik, Rosengren, Frida, Salim, Maryem, Vallon-Christersson, Johan, Törngren, Therese, Kvist, Anders, Ringnér, Markus, Svane, Inge Marie, Jönsson, Göran

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High‐resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization von Jönsson, Göran, Staaf, Johan, Olsson, Eleonor, Heidenblad, Markus, Vallon‐Christersson, Johan, Osoegawa, Kazutoyo, de Jong, Pieter, Oredsson, Stina, Ringnér, Markus, Höglund, Mattias, Borg, Åke

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Alternative promoters and splicing create multiple functionally distinct isoforms of oestrogen receptor alpha in breast cancer and healthy tissues von Balcazar Lopez, Carlos Enrique, Albrecht, Juliane, Hafstað, Völundur, Börjesson Freitag, Cornelia, Vallon‐Christersson, Johan, Bellodi, Cristian, Persson, Helena

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Glucocorticoid-resistant B cell acute lymphoblastic leukemia displays receptor tyrosine kinase activation von Chougule, Rohit A., Shah, Kinjal, Moharram, Sausan A., Vallon-Christersson, Johan, Kazi, Julhash U.

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An independent poor-prognosis subtype of breast cancer defined by a distinct tumor immune microenvironment von Tekpli, Xavier, Lien, Tonje, Røssevold, Andreas Hagen, Nebdal, Daniel, Borgen, Elin, Ohnstad, Hege Oma, Kyte, Jon Amund, Vallon-Christersson, Johan, Fongaard, Marie, Due, Eldri Undlien, Svartdal, Lisa Gregusson, Sveli, My Anh Tu, Garred, Øystein, Frigessi, Arnoldo, Sahlberg, Kristine Kleivi, Sørlie, Therese, Russnes, Hege G., Naume, Bjørn, Kristensen, Vessela N.

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Prediction of gene expression-based breast cancer proliferation scores from histopathology whole slide images using deep learning von Ekholm, Andreas, Wang, Yinxi, Vallon-Christersson, Johan, Boissin, Constance, Rantalainen, Mattias

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Caveolin-1 gene expression provides additional prognostic information combined with PAM50 risk of recurrence (ROR) score in breast cancer von Godina, Christopher, Belting, Mattias, Vallon-Christersson, Johan, Isaksson, Karolin, Bosch, Ana, Jernström, Helena

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Molecular analyses of triple-negative breast cancer in the young and elderly von Aine, Mattias, Boyaci, Ceren, Hartman, Johan, Häkkinen, Jari, Mitra, Shamik, Campos, Ana Bosch, Nimeus, Emma, Ehinger, Anna, Vallon-Christersson, Johan, Borg, Åke, Staaf, Johan

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Improved detection of clinically relevant fusion transcripts in cancer by machine learning classification von Hafstað, Völundur, Häkkinen, Jari, Larsson, Malin, Staaf, Johan, Vallon-Christersson, Johan, Persson, Helena

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Development and prognostic validation of a three-level NHG-like deep learning-based model for histological grading of breast cancer von Sharma, Abhinav, Weitz, Philippe, Wang, Yinxi, Liu, Bojing, Vallon-Christersson, Johan, Hartman, Johan, Rantalainen, Mattias

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Dynamic methylation and expression of alternative promoters for oestrogen receptor alpha in cell line models of fulvestrant resistance von Albrecht, Juliane, Müller, Mirjam, Hafstað, Völundur, Kaminska, Kamila, Vallon‐Christersson, Johan, Honeth, Gabriella, Persson, Helena

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