mTOR inhibits autophagy by controlling ULK1 ubiquitylation, self-association and function through AMBRA1 and TRAF6 von Nazio, Francesca, Strappazzon, Flavie, Antonioli, Manuela, Bielli, Pamela, Cianfanelli, Valentina, Bordi, Matteo, Gretzmeier, Christine, Dengjel, Joern, Piacentini, Mauro, Fimia, Gian Maria, Cecconi, Francesco

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Collagen constitutes about 12% in females and 17% in males of the total protein in mice von Tarnutzer, Katharina, Siva Sankar, Devanarayanan, Dengjel, Joern, Ewald, Collin Y.

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A novel ATG5 interaction with Ku70 potentiates DNA repair upon genotoxic stress von Demirbag-Sarikaya, Sinem, Akkoc, Yunus, Turgut, Sıla, Erbil-Bilir, Secil, Kocaturk, Nur Mehpare, Dengjel, Joern, Gozuacik, Devrim

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Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks von Boerries, Melanie, Grahammer, Florian, Eiselein, Sven, Buck, Moritz, Meyer, Charlotte, Goedel, Markus, Bechtel, Wibke, Zschiedrich, Stefan, Pfeifer, Dietmar, Laloë, Denis, Arrondel, Christelle, Gonçalves, Sara, Krüger, Marcus, Harvey, Scott J., Busch, Hauke, Dengjel, Joern, Huber, Tobias B.

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AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation von Cianfanelli, Valentina, Fuoco, Claudia, Lorente, Mar, Salazar, Maria, Quondamatteo, Fabio, Gherardini, Pier Federico, De Zio, Daniela, Nazio, Francesca, Antonioli, Manuela, D’Orazio, Melania, Skobo, Tatjana, Bordi, Matteo, Rohde, Mikkel, Dalla Valle, Luisa, Helmer-Citterich, Manuela, Gretzmeier, Christine, Dengjel, Joern, Fimia, Gian Maria, Piacentini, Mauro, Di Bartolomeo, Sabrina, Velasco, Guillermo, Cecconi, Francesco

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Hexokinase 3 enhances myeloid cell survival via non-glycolytic functions von Seiler, Kristina, Humbert, Magali, Minder, Petra, Mashimo, Iris, Schläfli, Anna M., Krauer, Deborah, Federzoni, Elena A., Vu, Bich, Moresco, James J., Yates, John R., Sadowski, Martin C., Radpour, Ramin, Kaufmann, Thomas, Sarry, Jean-Emmanuel, Dengjel, Joern, Tschan, Mario P., Torbett, Bruce E.

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Secretome of adipose-derived mesenchymal stem cells promotes skeletal muscle regeneration through synergistic action of extracellular vesicle cargo and soluble proteins von Mitchell, Robert, Mellows, Ben, Sheard, Jonathan, Antonioli, Manuela, Kretz, Oliver, Chambers, David, Zeuner, Marie-Theres, Tomkins, James E, Denecke, Bernd, Musante, Luca, Joch, Barbara, Debacq-Chainiaux, Florence, Holthofer, Harry, Ray, Steve, Huber, Tobias B, Dengjel, Joern, De Coppi, Paolo, Widera, Darius, Patel, Ketan

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Involvement of mitochondrial dynamics in the segregation of mitochondrial matrix proteins during stationary phase mitophagy von Abeliovich, Hagai, Zarei, Mostafa, Rigbolt, Kristoffer T. G., Youle, Richard J., Dengjel, Joern

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Comparison of ERLIC–TiO2, HILIC–TiO2, and SCX–TiO2 for Global Phosphoproteomics Approaches von Zarei, Mostafa, Sprenger, Adrian, Metzger, Fabian, Gretzmeier, Christine, Dengjel, Joern

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Novel protein complexes containing autophagy and UPS components regulate proteasome-dependent PARK2 recruitment onto mitochondria and PARK2-PARK6 activity during mitophagy von Kocaturk, Nur Mehpare, Peker, Nesibe, Eberhart, Karin, Akkoc, Yunus, Deveci, Gamze, Dengjel, Joern, Gozuacik, Devrim

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Spermidine Suppresses Age-Associated Memory Impairment by Preventing Adverse Increase of Presynaptic Active Zone Size and Release von Gupta, Varun K, Pech, Ulrike, Bhukel, Anuradha, Fulterer, Andreas, Ender, Anatoli, Mauermann, Stephan F, Andlauer, Till F M, Antwi-Adjei, Emmanuel, Beuschel, Christine, Thriene, Kerstin, Maglione, Marta, Quentin, Christine, Bushow, René, Schwärzel, Martin, Mielke, Thorsten, Madeo, Frank, Dengjel, Joern, Fiala, André, Sigrist, Stephan J

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Rapid Combinatorial ERLIC–SCX Solid-Phase Extraction for In-Depth Phosphoproteome Analysis von Zarei, Mostafa, Sprenger, Adrian, Gretzmeier, Christine, Dengjel, Joern

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A Multi-layered Quantitative In Vivo Expression Atlas of the Podocyte Unravels Kidney Disease Candidate Genes von Rinschen, Markus M., Gödel, Markus, Grahammer, Florian, Zschiedrich, Stefan, Helmstädter, Martin, Kretz, Oliver, Zarei, Mostafa, Braun, Daniela A., Dittrich, Sebastian, Pahmeyer, Caroline, Schroder, Patricia, Teetzen, Carolin, Gee, HeonYung, Daouk, Ghaleb, Pohl, Martin, Kuhn, Elisa, Schermer, Bernhard, Küttner, Victoria, Boerries, Melanie, Busch, Hauke, Schiffer, Mario, Bergmann, Carsten, Krüger, Marcus, Hildebrandt, Friedhelm, Dengjel, Joern, Benzing, Thomas, Huber, Tobias B.

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Vectorial Import via a Metastable Disulfide-Linked Complex Allows for a Quality Control Step and Import by the Mitochondrial Disulfide Relay von Habich, Markus, Salscheider, Silja Lucia, Murschall, Lena Maria, Hoehne, Michaela Nicole, Fischer, Manuel, Schorn, Fabian, Petrungaro, Carmelina, Ali, Muna, Erdogan, Alican J., Abou-Eid, Shadi, Kashkar, Hamid, Dengjel, Joern, Riemer, Jan

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Bacterial lectin BambL acts as a B cell superantigen von Frensch, Marco, Jäger, Christina, Müller, Peter F., Tadić, Annamaria, Wilhelm, Isabel, Wehrum, Sarah, Diedrich, Britta, Fischer, Beate, Meléndez, Ana Valeria, Dengjel, Joern, Eibel, Hermann, Römer, Winfried

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Combinatorial Use of Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC) and Strong Cation Exchange (SCX) Chromatography for In-Depth Phosphoproteome Analysis von Zarei, Mostafa, Sprenger, Adrian, Gretzmeier, Christine, Dengjel, Joern

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ROCK1/2 signaling contributes to corticosteroid-refractory acute graft-versus-host disease von Maas-Bauer, Kristina, Stell, Anna-Verena, Yan, Kai-Li, de Vega, Enrique, Vinnakota, Janaki Manoja, Unger, Susanne, Núñez, Nicolas, Norona, Johana, Talvard-Balland, Nana, Koßmann, Stefanie, Schwan, Carsten, Miething, Cornelius, Martens, Uta S., Shoumariyeh, Khalid, Nestor, Rosa P., Duquesne, Sandra, Hanke, Kathrin, Rackiewicz, Michal, Hu, Zehan, El Khawanky, Nadia, Taromi, Sanaz, Andrlova, Hana, Faraidun, Hemin, Walter, Stefanie, Pfeifer, Dietmar, Follo, Marie, Waldschmidt, Johannes, Melchinger, Wolfgang, Rassner, Michael, Wehr, Claudia, Schmitt-Graeff, Annette, Halbach, Sebastian, Liao, James, Häcker, Georg, Brummer, Tilman, Dengjel, Joern, Andrieux, Geoffroy, Grosse, Robert, Tugues, Sonia, Blazar, Bruce R., Becher, Burkhard, Boerries, Melanie, Zeiser, Robert

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The Quantitative Nuclear Matrix Proteome as a Biochemical Snapshot of Nuclear Organization von Engelke, Rudolf, Riede, Julia, Hegermann, Jan, Wuerch, Andreas, Eimer, Stefan, Dengjel, Joern, Mittler, Gerhard

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Macroautophagy Proteins Assist Epstein Barr Virus Production and Get Incorporated Into the Virus Particles von Nowag, Heike, Guhl, Bruno, Thriene, Kerstin, Romao, Susana, Ziegler, Urs, Dengjel, Joern, Münz, Christian

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Protein complexes and neighborhoods driving autophagy von Siva Sankar, Devanarayanan, Dengjel, Jörn

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