Deep learning for healthcare: review, opportunities and challenges von Miotto, Riccardo, Wang, Fei, Wang, Shuang, Jiang, Xiaoqian, Dudley, Joel T

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Deep Patient: An Unsupervised Representation to Predict the Future of Patients from the Electronic Health Records von Miotto, Riccardo, Li, Li, Kidd, Brian A., Dudley, Joel T.

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Machine-Learning Algorithms to Automate Morphological and Functional Assessments in 2D Echocardiography von Narula, Sukrit, BS, Shameer, Khader, PhD, Salem Omar, Alaa Mabrouk, MD, PhD, Dudley, Joel T., PhD, Sengupta, Partho P., MD, DM

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Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review von Sheikhalishahi, Seyedmostafa, Miotto, Riccardo, Dudley, Joel T, Lavelli, Alberto, Rinaldi, Fabio, Osmani, Venet

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Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus von Readhead, Ben, Haure-Mirande, Jean-Vianney, Funk, Cory C., Richards, Matthew A., Shannon, Paul, Haroutunian, Vahram, Sano, Mary, Liang, Winnie S., Beckmann, Noam D., Price, Nathan D., Reiman, Eric M., Schadt, Eric E., Ehrlich, Michelle E., Gandy, Sam, Dudley, Joel T.

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Necroptosis activation in Alzheimer's disease von Caccamo, Antonella, Branca, Caterina, Piras, Ignazio S, Ferreira, Eric, Huentelman, Matthew J, Liang, Winnie S, Readhead, Ben, Dudley, Joel T, Spangenberg, Elizabeth E, Green, Kim N, Belfiore, Ramona, Winslow, Wendy, Oddo, Salvatore

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Viral Dynamics of SARS-CoV-2 Variants in Vaccinated and Unvaccinated Persons von Kissler, Stephen M, Fauver, Joseph R, Mack, Christina, Tai, Caroline G, Breban, Mallery I, Watkins, Anne E, Samant, Radhika M, Anderson, Deverick J, Metti, Jessica, Khullar, Gaurav, Baits, Rachel, MacKay, Matthew, Salgado, Daisy, Baker, Tim, Dudley, Joel T, Mason, Christopher E, Ho, David D, Grubaugh, Nathan D, Grad, Yonatan H

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In silico methods for drug repurposing and pharmacology von Hodos, Rachel A., Kidd, Brian A., Shameer, Khader, Readhead, Ben P., Dudley, Joel T.

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Androgen Deprivation Therapy and Future Alzheimer's Disease Risk von Nead, Kevin T, Gaskin, Greg, Chester, Cariad, Swisher-McClure, Samuel, Dudley, Joel T, Leeper, Nicholas J, Shah, Nigam H

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Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets von Suthram, Silpa, Dudley, Joel T, Chiang, Annie P, Chen, Rong, Hastie, Trevor J, Butte, Atul J

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The Asthma Mobile Health Study, a large-scale clinical observational study using ResearchKit von Chan, Yu-Feng Yvonne, Wang, Pei, Rogers, Linda, Tignor, Nicole, Zweig, Micol, Hershman, Steven G, Genes, Nicholas, Scott, Erick R, Krock, Eric, Badgeley, Marcus, Edgar, Ron, Violante, Samantha, Wright, Rosalind, Powell, Charles A, Dudley, Joel T, Schadt, Eric E

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Deep learning predicts hip fracture using confounding patient and healthcare variables von Badgeley, Marcus A., Zech, John R., Oakden-Rayner, Luke, Glicksberg, Benjamin S., Liu, Manway, Gale, William, McConnell, Michael V., Percha, Bethany, Snyder, Thomas M., Dudley, Joel T.

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Integrative transcriptome imputation reveals tissue-specific and shared biological mechanisms mediating susceptibility to complex traits von Zhang, Wen, Voloudakis, Georgios, Rajagopal, Veera M., Readhead, Ben, Dudley, Joel T., Schadt, Eric E., Björkegren, Johan L. M., Kim, Yungil, Fullard, John F., Hoffman, Gabriel E., Roussos, Panos

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Saracatinib, a Selective Src Kinase Inhibitor, Blocks Fibrotic Responses in Preclinical Models of Pulmonary Fibrosis von Ahangari, Farida, Becker, Christine, Foster, Daniel G, Chioccioli, Maurizio, Nelson, Meghan, Beke, Keriann, Wang, Xing, Justet, Aurelien, Adams, Taylor, Readhead, Benjamin, Meador, Carly, Correll, Kelly, Lili, Loukia N, Roybal, Helen M, Rose, Kadi-Ann, Ding, Shuizi, Barnthaler, Thomas, Briones, Natalie, DeIuliis, Giuseppe, Schupp, Jonas C, Li, Qin, Omote, Norihito, Aschner, Yael, Sharma, Lokesh, Kopf, Katrina W, Magnusson, Björn, Hicks, Ryan, Backmark, Anna, Dela Cruz, Charles S, Rosas, Ivan, Cousens, Leslie P, Dudley, Joel T, Kaminski, Naftali, Downey, Gregory P

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Isolation and Identification of the Follicular Microbiome: Implications for Acne Research von Hall, Jacob B., Cong, Zhaoyuan, Imamura-Kawasawa, Yuka, Kidd, Brian A., Dudley, Joel T., Thiboutot, Diane M., Nelson, Amanda M.

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A drug repositioning approach identifies tricyclic antidepressants as inhibitors of small cell lung cancer and other neuroendocrine tumors von Jahchan, Nadine S, Dudley, Joel T, Mazur, Pawel K, Flores, Natasha, Yang, Dian, Palmerton, Alec, Zmoos, Anne-Flore, Vaka, Dedeepya, Tran, Kim Q T, Zhou, Margaret, Krasinska, Karolina, Riess, Jonathan W, Neal, Joel W, Khatri, Purvesh, Park, Kwon S, Butte, Atul J, Sage, Julien

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In silico research in the era of cloud computing von Dudley, Joel T, Butte, Atul J

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Deficiency of TYROBP, an adapter protein for TREM2 and CR3 receptors, is neuroprotective in a mouse model of early Alzheimer’s pathology von Haure-Mirande, Jean-Vianney, Audrain, Mickael, Fanutza, Tomas, Kim, Soong Ho, Klein, William L., Glabe, Charles, Readhead, Ben, Dudley, Joel T., Blitzer, Robert D., Wang, Minghui, Zhang, Bin, Schadt, Eric E., Gandy, Sam, Ehrlich, Michelle E.

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Quantifying the impact of immune history and variant on SARS-CoV-2 viral kinetics and infection rebound: A retrospective cohort study von Hay, James A, Kissler, Stephen M, Fauver, Joseph R, Mack, Christina, Tai, Caroline G, Samant, Radhika M, Connolly, Sarah, Anderson, Deverick J, Khullar, Gaurav, MacKay, Matthew, Patel, Miral, Kelly, Shannan, Manhertz, April, Eiter, Isaac, Salgado, Daisy, Baker, Tim, Howard, Ben, Dudley, Joel T, Mason, Christopher E, Nair, Manoj, Huang, Yaoxing, DiFiori, John, Ho, David D, Grubaugh, Nathan D, Grad, Yonatan H

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Dysregulation of miRNA-9 in a Subset of Schizophrenia Patient-Derived Neural Progenitor Cells von Topol, Aaron, Zhu, Shijia, Hartley, Brigham J., English, Jane, Hauberg, Mads E., Tran, Ngoc, Rittenhouse, Chelsea Ann, Simone, Anthony, Ruderfer, Douglas M., Johnson, Jessica, Readhead, Ben, Hadas, Yoav, Gochman, Peter A., Wang, Ying-Chih, Shah, Hardik, Cagney, Gerard, Rapoport, Judith, Gage, Fred H., Dudley, Joel T., Sklar, Pamela, Mattheisen, Manuel, Cotter, David, Fang, Gang, Brennand, Kristen J.

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