Spatially resolved transcriptomics adds a new dimension to genomics von Larsson, Ludvig, Frisén, Jonas, Lundeberg, Joakim

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Spatially Resolved Transcriptomes—Next Generation Tools for Tissue Exploration von Asp, Michaela, Bergenstråhle, Joseph, Lundeberg, Joakim

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Seamless integration of image and molecular analysis for spatial transcriptomics workflows von Bergenstrahle, Joseph, Larsson, Ludvig, Lundeberg, Joakim

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Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions von Andersson, Alma, Larsson, Ludvig, Stenbeck, Linnea, Salmén, Fredrik, Ehinger, Anna, Wu, Sunny Z., Al-Eryani, Ghamdan, Roden, Daniel, Swarbrick, Alex, Borg, Åke, Frisén, Jonas, Engblom, Camilla, Lundeberg, Joakim

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Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis von Maniatis, Silas, Äijö, Tarmo, Vickovic, Sanja, Braine, Catherine, Kang, Kristy, Mollbrink, Annelie, Fagegaltier, Delphine, Andrusivová, Žaneta, Saarenpää, Sami, Saiz-Castro, Gonzalo, Cuevas, Miguel, Watters, Aaron, Lundeberg, Joakim, Bonneau, Richard, Phatnani, Hemali

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Spatially Resolved Transcriptomics Enables Dissection of Genetic Heterogeneity in Stage III Cutaneous Malignant Melanoma von Thrane, Kim, Eriksson, Hanna, Maaskola, Jonas, Hansson, Johan, Lundeberg, Joakim

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Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays von Giacomello, Stefania, Lundeberg, Joakim

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Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver von Hildebrandt, Franziska, Andersson, Alma, Saarenpää, Sami, Larsson, Ludvig, Van Hul, Noémi, Kanatani, Sachie, Masek, Jan, Ellis, Ewa, Barragan, Antonio, Mollbrink, Annelie, Andersson, Emma R., Lundeberg, Joakim, Ankarklev, Johan

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High-definition spatial transcriptomics for in situ tissue profiling von Vickovic, Sanja, Eraslan, Gökcen, Salmén, Fredrik, Klughammer, Johanna, Stenbeck, Linnea, Schapiro, Denis, Äijö, Tarmo, Bonneau, Richard, Bergenstråhle, Ludvig, Navarro, José Fernandéz, Gould, Joshua, Griffin, Gabriel K., Borg, Åke, Ronaghi, Mostafa, Frisén, Jonas, Lundeberg, Joakim, Regev, Aviv, Ståhl, Patrik L.

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Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease von Chen, Wei-Ting, Lu, Ashley, Craessaerts, Katleen, Pavie, Benjamin, Sala Frigerio, Carlo, Corthout, Nikky, Qian, Xiaoyan, Laláková, Jana, Kühnemund, Malte, Voytyuk, Iryna, Wolfs, Leen, Mancuso, Renzo, Salta, Evgenia, Balusu, Sriram, Snellinx, An, Munck, Sebastian, Jurek, Aleksandra, Fernandez Navarro, Jose, Saido, Takaomi C., Huitinga, Inge, Lundeberg, Joakim, Fiers, Mark, De Strooper, Bart

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Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity von Berglund, Emelie, Maaskola, Jonas, Schultz, Niklas, Friedrich, Stefanie, Marklund, Maja, Bergenstråhle, Joseph, Tarish, Firas, Tanoglidi, Anna, Vickovic, Sanja, Larsson, Ludvig, Salmén, Fredrik, Ogris, Christoph, Wallenborg, Karolina, Lagergren, Jens, Ståhl, Patrik, Sonnhammer, Erik, Helleday, Thomas, Lundeberg, Joakim

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Visualization and analysis of gene expression in tissue sections by spatial transcriptomics von Ståhl, Patrik L., Salmén, Fredrik, Vickovic, Sanja, Lundmark, Anna, Navarro, José Fernández, Magnusson, Jens, Giacomello, Stefania, Asp, Michaela, Westholm, Jakub O., Huss, Mikael, Mollbrink, Annelie, Linnarsson, Sten, Codeluppi, Simone, Borg, Åke, Pontén, Fredrik, Costea, Paul Igor, Sahlén, Pelin, Mulder, Jan, Bergmann, Olaf, Lundeberg, Joakim, Frisén, Jonas

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Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma von Ji, Andrew L., Rubin, Adam J., Thrane, Kim, Jiang, Sizun, Reynolds, David L., Meyers, Robin M., Guo, Margaret G., George, Benson M., Mollbrink, Annelie, Bergenstråhle, Joseph, Larsson, Ludvig, Bai, Yunhao, Zhu, Bokai, Bhaduri, Aparna, Meyers, Jordan M., Rovira-Clavé, Xavier, Hollmig, S. Tyler, Aasi, Sumaira Z., Nolan, Garry P., Lundeberg, Joakim, Khavari, Paul A.

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Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography von Andersson, Alma, Bergenstråhle, Joseph, Asp, Michaela, Bergenstråhle, Ludvig, Jurek, Aleksandra, Fernández Navarro, José, Lundeberg, Joakim

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Sequencing degraded RNA addressed by 3' tag counting von Sigurgeirsson, Benjamín, Emanuelsson, Olof, Lundeberg, Joakim

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Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections von Salmén, Fredrik, Ståhl, Patrik L., Mollbrink, Annelie, Navarro, José Fernández, Vickovic, Sanja, Frisén, Jonas, Lundeberg, Joakim

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SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation von Bergenstrahle, Joseph, Bergenstrahle, Ludvig, Lundeberg, Joakim

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Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics von Ratz, Michael, von Berlin, Leonie, Larsson, Ludvig, Martin, Marcel, Westholm, Jakub Orzechowski, La Manno, Gioele, Lundeberg, Joakim, Frisén, Jonas

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A latent lineage potential in resident neural stem cells enables spinal cord repair von Llorens-Bobadilla, Enric, Chell, James M., Le Merre, Pierre, Wu, Yicheng, Zamboni, Margherita, Bergenstrahle, Joseph, Stenudd, Moa, Sopova, Elena, Lundeberg, Joakim, Shupliakov, Oleg, Carlen, Marie, Frisen, Jonas

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Super-resolved spatial transcriptomics by deep data fusion von Bergenstråhle, Ludvig, He, Bryan, Bergenstråhle, Joseph, Abalo, Xesús, Mirzazadeh, Reza, Thrane, Kim, Ji, Andrew L., Andersson, Alma, Larsson, Ludvig, Stakenborg, Nathalie, Boeckxstaens, Guy, Khavari, Paul, Zou, James, Lundeberg, Joakim, Maaskola, Jonas

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