Computational tools for designing and engineering enzymes von Damborsky, Jiri, Brezovsky, Jan

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HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information von Sumbalova, Lenka, Stourac, Jan, Martinek, Tomas, Bednar, David, Damborsky, Jiri

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Multi-pathogen infections and Alzheimer's disease von Vigasova, Dana, Nemergut, Michal, Liskova, Barbora, Damborsky, Jiri

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Computational Design of Stable and Soluble Biocatalysts von Musil, Milos, Konegger, Hannes, Hon, Jiri, Bednar, David, Damborsky, Jiri

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Strategies for Stabilization of Enzymes in Organic Solvents von Stepankova, Veronika, Bidmanova, Sarka, Koudelakova, Tana, Prokop, Zbynek, Chaloupkova, Radka, Damborsky, Jiri

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CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories von Jurcik, Adam, Bednar, David, Byska, Jan, Marques, Sergio M, Furmanova, Katarina, Daniel, Lukas, Kokkonen, Piia, Brezovsky, Jan, Strnad, Ondrej, Stourac, Jan, Pavelka, Antonin, Manak, Martin, Damborsky, Jiri, Kozlikova, Barbora

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CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures von Chovancova, Eva, Pavelka, Antonin, Benes, Petr, Strnad, Ondrej, Brezovsky, Jan, Kozlikova, Barbora, Gora, Artur, Sustr, Vilem, Klvana, Martin, Medek, Petr, Biedermannova, Lada, Sochor, Jiri, Damborsky, Jiri

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Engineering the protein dynamics of an ancestral luciferase von Schenkmayerova, Andrea, Pinto, Gaspar P., Toul, Martin, Marek, Martin, Hernychova, Lenka, Planas-Iglesias, Joan, Daniel Liskova, Veronika, Pluskal, Daniel, Vasina, Michal, Emond, Stephane, Dörr, Mark, Chaloupkova, Radka, Bednar, David, Prokop, Zbynek, Hollfelder, Florian, Bornscheuer, Uwe T., Damborsky, Jiri

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PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations von Bendl, Jaroslav, Stourac, Jan, Salanda, Ondrej, Pavelka, Antonin, Wieben, Eric D, Zendulka, Jaroslav, Brezovsky, Jan, Damborsky, Jiri

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FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants von Bednar, David, Beerens, Koen, Sebestova, Eva, Bendl, Jaroslav, Khare, Sagar, Chaloupkova, Radka, Prokop, Zbynek, Brezovsky, Jan, Baker, David, Damborsky, Jiri

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Immobilized Synthetic Pathway for Biodegradation of Toxic Recalcitrant Pollutant 1,2,3-Trichloropropane von Dvorak, Pavel, Bidmanova, Sarka, Damborsky, Jiri, Prokop, Zbynek

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HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering von Bendl, Jaroslav, Stourac, Jan, Sebestova, Eva, Vavra, Ondrej, Musil, Milos, Brezovsky, Jan, Damborsky, Jiri

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CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules von Pavelka, Antonin, Sebestova, Eva, Kozlikova, Barbora, Brezovsky, Jan, Sochor, Jiri, Damborsky, Jiri

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Ancestral Haloalkane Dehalogenases Show Robustness and Unique Substrate Specificity von Babkova, Petra, Sebestova, Eva, Brezovsky, Jan, Chaloupkova, Radka, Damborsky, Jiri

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Exploring the challenges of computational enzyme design by rebuilding the active site of a dehalogenase von Jindal, Garima, Slanska, Katerina, Kolev, Veselin, Damborsky, Jiri, Prokop, Zbynek, Warshel, Arieh

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Computational tools for designing and engineering biocatalysts von Damborsky, Jiri, Brezovsky, Jan

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CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures von Kozlikova, Barbora, Sebestova, Eva, Sustr, Vilem, Brezovsky, Jan, Strnad, Ondrej, Daniel, Lukas, Bednar, David, Pavelka, Antonin, Manak, Martin, Bezdeka, Martin, Benes, Petr, Kotry, Matus, Gora, Artur, Damborsky, Jiri, Sochor, Jiri

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Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway von Dvorak, Pavel, Chrast, Lukas, Nikel, Pablo I, Fedr, Radek, Soucek, Karel, Sedlackova, Miroslava, Chaloupkova, Radka, de Lorenzo, Víctor, Prokop, Zbynek, Damborsky, Jiri

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FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction von Musil, Milos, Khan, Rayyan Tariq, Beier, Andy, Stourac, Jan, Konegger, Hannes, Damborsky, Jiri, Bednar, David

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Structural Biology and Protein Engineering of Thrombolytics von Mican, Jan, Toul, Martin, Bednar, David, Damborsky, Jiri

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