Distance-based protein folding powered by deep learning von Xu, Jinbo

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Analysis of distance‐based protein structure prediction by deep learning in CASP13 von Xu, Jinbo, Wang, Sheng

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RaptorX-Property: a web server for protein structure property prediction von Wang, Sheng, Li, Wei, Liu, Shiwang, Xu, Jinbo

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Protein Secondary Structure Prediction Using Deep Convolutional Neural Fields von Wang, Sheng, Peng, Jian, Ma, Jianzhu, Xu, Jinbo

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Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model von Wang, Sheng, Sun, Siqi, Li, Zhen, Zhang, Renyu, Xu, Jinbo

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Raptorx: Exploiting structure information for protein alignment by statistical inference von Peng, Jian, Xu, Jinbo

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A multimodal deep learning framework for predicting drug-drug interaction events von Deng, Yifan, Xu, Xinran, Qiu, Yang, Xia, Jingbo, Zhang, Wen, Liu, Shichao

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Predicting protein-protein interactions through sequence-based deep learning von Hashemifar, Somaye, Neyshabur, Behnam, Khan, Aly A, Xu, Jinbo

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Deep template-based protein structure prediction von Wu, Fandi, Xu, Jinbo

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Predicting protein contact map using evolutionary and physical constraints by integer programming von Wang, Zhiyong, Xu, Jinbo

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Colour deconvolution: stain unmixing in histological imaging von Landini, Gabriel, Martinelli, Giovanni, Piccinini, Filippo

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Improved protein structure prediction by deep learning irrespective of co-evolution information von Xu, Jinbo, McPartlon, Matthew, Li, Jin

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Analysis of deep learning methods for blind protein contact prediction in CASP12 von Wang, Sheng, Sun, Siqi, Xu, Jinbo

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BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides von Charoenkwan, Phasit, Nantasenamat, Chanin, Hasan, Md Mehedi, Manavalan, Balachandran, Shoombuatong, Watshara

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HyperAttentionDTI: improving drug–protein interaction prediction by sequence-based deep learning with attention mechanism von Zhao, Qichang, Zhao, Haochen, Zheng, Kai, Wang, Jianxin

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Global alignment of multiple protein interaction networks with application to functional orthology detection von Singh, Rohit, Xu, Jinbo, Berger, Bonnie

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SoluProt: prediction of soluble protein expression in Escherichia coli von Hon, Jiri, Marusiak, Martin, Martinek, Tomas, Kunka, Antonin, Zendulka, Jaroslav, Bednar, David, Damborsky, Jiri

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ABlooper: fast accurate antibody CDR loop structure prediction with accuracy estimation von Abanades, Brennan, Georges, Guy, Bujotzek, Alexander, Deane, Charlotte M

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GenMap: ultra-fast computation of genome mappability von Pockrandt, Christopher, Alzamel, Mai, Iliopoulos, Costas S, Reinert, Knut

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Template-based protein structure modeling using the RaptorX web server von Källberg, Morten, Wang, Haipeng, Wang, Sheng, Peng, Jian, Wang, Zhiyong, Lu, Hui, Xu, Jinbo

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