Nanopore native RNA sequencing of a human poly(A) transcriptome von Workman, Rachael E., Tang, Alison D., Tang, Paul S., Jain, Miten, Tyson, John R., Razaghi, Roham, Zuzarte, Philip C., Gilpatrick, Timothy, Payne, Alexander, Quick, Joshua, Sadowski, Norah, Holmes, Nadine, de Jesus, Jaqueline Goes, Jones, Karen L., Soulette, Cameron M., Snutch, Terrance P., Loman, Nicholas, Paten, Benedict, Loose, Matthew, Simpson, Jared T., Olsen, Hugh E., Brooks, Angela N., Akeson, Mark, Timp, Winston

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Importation and early local transmission of COVID-19 in Brazil, 2020 von de Jesus, Jaqueline Goes, Sacchi, Claudio, Candido, Darlan da Silva, Claro, Ingra Morales, Silva Sale, Flavia Cristina, Manuli, Erika Regina, Borges da Silva, Daniela Bernardes, de Paiva, Terezinha Maria, Benega Pinho, Margarete Aparecida, de Oliveira Santos, Katia Correa, Hill, Sarah Catherine, Aguiar, Renato Santana, Romero, Filipe, Pereira dos Santos, Fabiana Cristina, Goncalves, Claudia Regina, Timenetsky, Maria do Carmo, Quick, Joshua, Rosa Croda, Julio Henrique, de Oliveira, Wanderson, Rambaut, Andrew, Pybus, Oliver G., Loman, Nicholas J., Sabino, Ester Cerdeira, Faria, Nuno Rodrigues

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Genetic differences of dengue virus 2 in patients with distinct clinical outcome von de Carvalho Marques, Beatriz, Sacchetto, Lívia, Banho, Cecília Artico, Estofolete, Cássia Fernanda, Dourado, Fernanda Simões, da Silva Cândido, Darlan, Dutra, Karina Rocha, da Silva Salles, Flávia Cristina, de Jesus, Jaqueline Góes, Sabino, Ester Cerdeira, Faria, Nuno Rodrigues, Nogueira, Maurício Lacerda

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Characterization of insect-specific Culex flavivirus (Flaviviridae) nucleotide sequences in mosquitoes from urban parks in São Paulo, Brazil von Coletti, Thaís de Moura, Romano, Camila Malta, Urbinatti, Paulo Roberto, Teixeira, Renildo Souza, Pedrosa, Leila Weiss de Almeida, Nardi, Marcello Schiavo, Natal, Delsio, Costa, Antônio Charlys da, Jesus, Jaqueline Goes de, Claro, Ingra Morales, Sabino, Ester Cerdeira, Witkin, Steven S., Marrelli, Mauro Toledo, Fernandes, Licia Natal

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An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar von Grubaugh, Nathan D, Gangavarapu, Karthik, Quick, Joshua, Matteson, Nathaniel L, De Jesus, Jaqueline Goes, Main, Bradley J, Tan, Amanda L, Paul, Lauren M, Brackney, Doug E, Grewal, Saran, Gurfield, Nikos, Van Rompay, Koen K A, Isern, Sharon, Michael, Scott F, Coffey, Lark L, Loman, Nicholas J, Andersen, Kristian G

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Dynamics of Early Establishment of SARS-CoV-2 VOC Omicron Lineages in Minas Gerais, Brazil von de Menezes, Mariane Talon, Moreira, Filipe Romero Rebello, Whittaker, Charles, Santos, Franciele Martins, Queiroz, Daniel Costa, Geddes, Victor, Fonseca, Paula Luize Camargos, de Jesus, Jaqueline Góes, Mendes-Oliveira, Franciane, Reis-Souza, Valquíria, Santos, Bibiana, Zauli, Danielle Alves Gomes, de Lima, Aline Brito, de Brito Mendonça, Cristiane, Alvim, Luige Biciati, do Prado Silva, Joice, Malta, Frederico Scott Varella, de Souza Ferreira, Alessandro Clayton, Faria, Nuno R, Sabino, Ester Cerdeira, Aguiar, Renato Santana

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SARS-CoV-2 reinfection caused by the P.1 lineage in Araraquara city, Sao Paulo State, Brazil von Romano, Camila Malta, Felix, Alvina Clara, de Paula, Anderson Vicente, de Jesus, Jaqueline Goes, Andrade, Pamela S., Candido, Darlan, de Oliveira, Franciane M., Ribeiro, Andreia C., da Silva, Francini C., Inemami, Marta, Costa, Angela Aparecida, Leal, Cibele O. D., Figueiredo, Walter Manso, Pannuti, Claudio Sergio, de Souza, William M., Faria, Nuno Rodrigues, Sabino, Ester Cerdeira

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Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples von Quick, Joshua, Grubaugh, Nathan D, Pullan, Steven T, Claro, Ingra M, Smith, Andrew D, Gangavarapu, Karthik, Oliveira, Glenn, Robles-Sikisaka, Refugio, Rogers, Thomas F, Beutler, Nathan A, Burton, Dennis R, Lewis-Ximenez, Lia Laura, de Jesus, Jaqueline Goes, Giovanetti, Marta, Hill, Sarah C, Black, Allison, Bedford, Trevor, Carroll, Miles W, Nunes, Marcio, Alcantara, Luiz Carlos, Sabino, Ester C, Baylis, Sally A, Faria, Nuno R, Loose, Matthew, Simpson, Jared T, Pybus, Oliver G, Andersen, Kristian G, Loman, Nicholas J

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Retrospective Genomic Surveillance of Chikungunya Transmission in Minas Gerais State, Southeast Brazil von Fritsch, Hegger, Giovanetti, Marta, Xavier, Joilson, Adelino, Talita Emile Ribeiro, Fonseca, Vagner, de Jesus, Jaqueline Góes, de Jesus, Ronaldo, Freitas, Carla, Peterka, Cassio Roberto Leonel, Campelo de Albuquerque, Carlos Frederico, Bispo de Filippis, Ana Maria, da Cunha, Rivaldo Venâncio, Silva, Erniria Carvalhais, Alcantara, Luiz Carlos Junior, Iani, Felipe Campos de Melo

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Local Transmission of SARS-CoV-2 Lineage B.1.1.7, Brazil, December 2020 von Claro, Ingra Morales, da Silva Sales, Flavia Cristina, Ramundo, Mariana Severo, Candido, Darlan S., Silva, Camila A. M., de Jesus, Jaqueline Goes, Manuli, Erika R., de Oliveira, Cristina Mendes, Scarpelli, Luciano, Campana, Gustavo, Pybus, Oliver G., Sabino, Ester Cerdeira, Faria, Nuno Rodrigues, Levi, Jose Eduardo

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Circulation of chikungunya virus East/Central/South African lineage in Rio de Janeiro, Brazil von Xavier, Joilson, Giovanetti, Marta, Fonseca, Vagner, Thézé, Julien, Gräf, Tiago, Fabri, Allison, Goes de Jesus, Jaqueline, Lima de Mendonça, Marcos Cesar, Damasceno Dos Santos Rodrigues, Cintia, Mares-Guia, Maria Angélica, Cardoso Dos Santos, Carolina, Fraga de Oliveira Tosta, Stephane, Candido, Darlan, Ribeiro Nogueira, Rita Maria, Luiz de Abreu, André, Kleber Oliveira, Wanderson, Campelo de Albuquerque, Carlos F, Chieppe, Alexandre, de Oliveira, Tulio, Brasil, Patrícia, Calvet, Guilherme, Carvalho Sequeira, Patrícia, Rodrigues Faria, Nuno, Bispo de Filippis, Ana Maria, Alcantara, Luiz Carlos Junior

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Epidemiologic History and Genetic Diversity Origins of Chikungunya and Dengue Viruses, Paraguay von Graf, Tiago, Vazquez, Cynthia, Giovanetti, Marta, de Bruycker-Nogueira, Fernanda, Fonseca, Vagner, Claro, Ingra Morales, de Jesus, Jaqueline Goes, Gomez, Andrea, Xavier, Joilson, Lima de Mendonca, Marcos Cesar, Villalba, Shirley, Torales, Juan, Gamarra, Maria Liz, Theze, Julien, Bispo de Filippis, Ana Maria, Azevedo, Vasco, de Oliveira, Tulio, Franco, Leticia, Campelo de Albuquerque, Carlos F., Irala, Sandra, Holmes, Edward Charles, Mendez Rico, Jairo Andres, Junior Alcantara, Luiz Carlos

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Lipidomic Analysis Reveals Serum Alteration of Plasmalogens in Patients Infected With ZIKA Virus von Queiroz, Adriano, Pinto, Isabella Fernanda Dantas, Lima, Maricélia, Giovanetti, Marta, de Jesus, Jaqueline Goes, Xavier, Joilson, Barreto, Fernanda Khouri, Canuto, Gisele André Baptista, do Amaral, Helineide Ramos, de Filippis, Ana Maria Bispo, Mascarenhas, Denise Lima, Falcão, Melissa Barreto, Santos, Normeide Pedreira, Azevedo, Vasco Ariston de Carvalho, Yoshinaga, Marcos Yukio, Miyamoto, Sayuri, Alcantara, Luiz Carlos Junior

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Genomic detection of a virus lineage replacement event of dengue virus serotype 2 in Brazil, 2019 von de Jesus, Jaqueline Goes, Dutra, Karina Rocha, Sales, Flavia Cristina da Silva, Claro, Ingra Morales, Terzian, Ana Carolina, Candido, Darlan da Silva, Hill, Sarah C, Thézé, Julien, Torres, Celeste, D’Agostini, Tatiana Lang, Felix, Alvina Clara, Reis, Andreia F Negri, Alcantara, Luiz Carlos Junior, de Abreu, André L, Croda, Júlio HR, de Oliveira, Wanderson K, de Filipis, Ana Maria Bispo, Camis, Maria do Carmo Rodrigues dos Santos, Romano, Camila Malta, Loman, Nick J, Pybus, Oliver G, Sabino, Ester Cerdeira, Nogueira, Mauricio L, Faria, Nuno Rodrigues

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Persistence of chikungunya ECSA genotype and local outbreak in an upper medium class neighborhood in Northeast Brazil von de Jesus, Jaqueline Goes, Wallau, Gabriel da Luz, Maia, Maricelia Lima, Xavier, Joilson, Oliveira Lima, Maria Aparecida, Fonseca, Vagner, de Abreu, Alvaro Salgado, de Oliveira Tosta, Stephane Fraga, do Amaral, Helineide Ramos, Barbosa Lima, Italo Andrade, Silva, Paloma Viana, dos Santos, Daiana Carlos, de Oliveira, Aline Sousa, de Souza, Siane Campos, Falcao, Melissa Barreto, Cerqueira, Erenilde, Machado, Lais Ceschini, Sobral, Mariana Carolina, Teodoro Rezende, Tatiana Maria, Pereira, Mylena Ribeiro, Pereira, Felicidade Mota, Gusmao Maia, Zuinara Pereira, de Oliveira Franca, Rafael Freitas, de Abreu, Andre Luiz, de Albuquerque e Melo, Carlos Frederico Campelo, Faria, Nuno Rodrigues, da Cunha, Rivaldo Venancio, Giovanetti, Marta, Junior Alcantara, Luiz Carlos

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Phylogenetics, Epidemiology and Temporal Patterns of Dengue Virus in Araraquara, São Paulo State von de Souza, Caio Santos, Caleiro, Giovana Santos, Claro, Ingra Morales, de Jesus, Jaqueline Goes, Coletti, Thaís Moura, da Silva, Camila Alves Maia, Costa, Ângela Aparecida, Inenami, Marta, Ribeiro, Andreia C, Felix, Alvina Clara, de Paula, Anderson Vicente, Figueiredo, Walter M, de Albuquerque Luna, Expedito José, Sabino, Ester C, Romano, Camila M

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Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome von Workman, Rachael E., Tang, Alison D., Tang, Paul S., Jain, Miten, Tyson, John R., Razaghi, Roham, Zuzarte, Philip C., Gilpatrick, Timothy, Payne, Alexander, Quick, Joshua, Sadowski, Norah, Holmes, Nadine, de Jesus, Jaqueline Goes, Jones, Karen L., Soulette, Cameron M., Snutch, Terrance P., Loman, Nicholas, Paten, Benedict, Loose, Matthew, Simpson, Jared T., Olsen, Hugh E., Brooks, Angela N., Akeson, Mark, Timp, Winston

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Understanding Sabiá virus infections (Brazilian mammarenavirus) von Nastri, Ana Catharina, Duarte-Neto, Amaro Nunes, Casadio, Luciana Vilas Boas, Souza, William Marciel de, Claro, Ingra M., Manuli, Erika R., Selegatto, Gloria, Salomão, Matias C., Fialkovitz, Gabriel, Taborda, Mariane, Almeida, Bianca Leal de, Magri, Marcello C., Guedes, Ana Rúbia, Perdigão Neto, Lauro Vieira, Sataki, Fatima Mitie, Guimarães, Thais, Mendes-Correa, Maria Cassia, Tozetto-Mendoza, Tania R., Fumagalli, Marcilio Jorge, Ho, Yeh-Li, Maia da Silva, Camila Alves, Coletti, Thaís M., Goes de Jesus, Jaqueline, Romano, Camila M., Hill, Sarah C., Pybus, Oliver, Rebello Pinho, João Renato, Ledesma, Felipe Lourenço, Casal, Yuri R., Kanamura, Cristina T., Tadeu de Araújo, Leonardo José, Ferreira, Camila Santos da Silva, Guerra, Juliana Mariotti, Figueiredo, Luiz Tadeu Moraes, Dolhnikoff, Marisa, Faria, Nuno R., Sabino, Ester C., Alves, Venâncio Avancini Ferreira, Levin, Anna S.

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SEQUENCIAMENTO DO GENOMA COMPLETO DO VÍRUS DA DENGUE SOROTIPO 1 CIRCULANTES EM ARARAQUARA-SP von Caio Santos de Souza, Giovana Santos Caleiro, Alvina Clara Felix, Anderson Vicente de Paula, Ingra Morales Claro, Jaqueline Goes de Jesus, Walter M. Figueiredo, Andreia C. Ribeiro, Ester C. Sabino, Camila M. Romano

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First case of SARS-COV-2 sequencing in cerebrospinal fluid of a patient with suspected demyelinating disease von Domingues, Renan Barros, Mendes-Correa, Maria Cássia, de Moura Leite, Fernando Brunale Vilela, Sabino, Ester Cerdeira, Salarini, Diego Zanotti, Claro, Ingra, Santos, Daniel Wagner, de Jesus, Jaqueline Goes, Ferreira, Noely Evangelista, Romano, Camila Malta, Soares, Carlos Augusto Senne

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