Portraits of TET-mediated DNA hydroxymethylation in cancer von Jeschke, Jana, Collignon, Evelyne, Fuks, François

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Inhibiting DNA methylation activates cancer testis antigens and expression of the antigen processing and presentation machinery in colon and ovarian cancer cells von Siebenkäs, Cornelia, Chiappinelli, Katherine B, Guzzetta, Angela A, Sharma, Anup, Jeschke, Jana, Vatapalli, Rajita, Baylin, Stephen B, Ahuja, Nita

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Improving Infinium MethylationEPIC data processing: re-annotation of enhancers and long noncoding RNA genes and benchmarking of normalization methods von Bizet, Martin, Defrance, Matthieu, Calonne, Emilie, Bontempi, Gianluca, Sotiriou, Christos, Fuks, François, Jeschke, Jana

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Correction: Inhibiting DNA methylation activates cancer testis antigens and expression of the antigen processing and presentation machinery in colon and ovarian cancer cells von Siebenkäs, Cornelia, Chiappinelli, Katherine B, Guzzetta, Angela A, Sharma, Anup, Jeschke, Jana, Vatapalli, Rajita, Baylin, Stephen B, Ahuja, Nita

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Genomic and Epigenomic Integration Identifies a Prognostic Signature in Colon Cancer von JOO MI YI, DHIR, Mashaal, SMITS, Kim M, VAN ENGELAND, Manon, WEIJENBERG, Matty P, LACOBUZIO-DONAHUE, Christine A, HERMAN, James G, SCHUEBEL, Kornel E, BAYLIN, Stephen B, AHUJA, Nita, VAN NESTE, Leander, DOWNING, Stephanie R, JESCHKE, Jana, GLÖCKNE, Sabine C, DE FREITAS CALMON, Marilia, HOOKER, Craig M, FUNES, Juan M, BOSHOFF, Chris

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Methylation of the claudin 1 promoter is associated with loss of expression in estrogen receptor positive breast cancer von Di Cello, Francescopaolo, Cope, Leslie, Li, Huili, Jeschke, Jana, Wang, Wei, Baylin, Stephen B, Zahnow, Cynthia A

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Buffy coat signatures of breast cancer risk in a prospective cohort study von Chung, Felicia Fei-Lei, Maldonado, Sandra González, Nemc, Amelie, Bouaoun, Liacine, Cahais, Vincent, Cuenin, Cyrille, Salle, Aurelie, Johnson, Theron, Ergüner, Bekir, Laplana, Marina, Datlinger, Paul, Jeschke, Jana, Weiderpass, Elisabete, Kristensen, Vessela, Delaloge, Suzette, Fuks, François, Risch, Angela, Ghantous, Akram, Plass, Christoph, Bock, Christoph, Kaaks, Rudolf, Herceg, Zdenko

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Sessile serrated adenomas and classical adenomas: An epigenetic perspective on premalignant neoplastic lesions of the gastrointestinal tract von Dhir, Mashaal, Yachida, Shinichi, Neste, Leander Van, Glöckner, Sabine C., Jeschke, Jana, Pappou, Emmanouil P., Montgomery, Elizabeth A., Herman, James G., Baylin, Stephen B., Iacobuzio‐Donahue, Christine, Ahuja, Nita

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Biomarkers for detection and prognosis of breast cancer identified by a functional hypermethylome screen von Jeschke, Jana, Van Neste, Leander, Glöckner, Sabine C., Dhir, Mashaal, Calmon, Marilia Freitas, Deregowski, Valérie, Van Criekinge, Wim, Vlassenbroeck, Ilse, Koch, Alexander, Chan, Timothy A., Cope, Leslie, Hooker, Craig M., Schuebel, Kornel E., Gabrielson, Edward, Winterpacht, Andreas, Baylin, Stephen B., Herman, James G., Ahuja, Nita

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MEXPRESS: visualizing expression, DNA methylation and clinical TCGA data von Koch, Alexander, De Meyer, Tim, Jeschke, Jana, Van Criekinge, Wim

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MEXPRESS update 2019 von Koch, Alexander, Jeschke, Jana, Van Criekinge, Wim, van Engeland, Manon, De Meyer, Tim

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Why novel mRNA modifications are so challenging and what we can do about it von Penning, Audrey, Jeschke, Jana, Fuks, François

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DNA methylation-based immune response signature improves patient diagnosis in multiple cancers von Jeschke, Jana, Bizet, Martin, Desmedt, Christine, Calonne, Emilie, Dedeurwaerder, Sarah, Garaud, Soizic, Koch, Alexander, Larsimont, Denis, Salgado, Roberto, Van den Eynden, Gert, Willard Gallo, Karen, Bontempi, Gianluca, Defrance, Matthieu, Sotiriou, Christos, Fuks, François

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DNA methylome profiling beyond promoters – taking an epigenetic snapshot of the breast tumor microenvironment von Jeschke, Jana, Collignon, Evelyne, Fuks, François

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Inhibiting DNA methylation activates cancer testis antigens and expression of the antigen processing and presentation machinery in colon and ovarian cancer cells (vol 12, e0179501,... von Siebenkas, Cornelia, Chiappinelli, Katherine B., Guzzetta, Angela A., Sharma, Anup, Jeschke, Jana, Vatapalli, Rajita, Baylin, Stephen B., Ahuja, Nita

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MEXPRESS update 2019 von Koch, Alexander, Jeschke, Jana, Van Criekinge, Wim, van Engeland, Manon, De Meyer, Tim

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Promoter Methylation of CDO1 Identifies Clear-Cell Renal Cell Cancer Patients with Poor Survival Outcome von Deckers, Ivette A G, Schouten, Leo J, Van Neste, Leander, van Vlodrop, Iris J H, Soetekouw, Patricia M M B, Baldewijns, Marcella M L L, Jeschke, Jana, Ahuja, Nita, Herman, James G, van den Brandt, Piet A, van Engeland, Manon

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Abstract 6283: Reannotation and normalisation of Infinium 850k data for improved analysis of methylation at enhancers and non-coding RNAs von Bizet, Martin, Defrance, Matthieu, Calonne, Emilie, Bontempi, Gianluca, Fuks, François, Jeschke, Jana

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Frequent inactivation of cysteine dioxygenase type 1 contributes to survival of breast cancer cells and resistance to anthracyclines von Jeschke, Jana, O'Hagan, Heather M, Zhang, Wei, Vatapalli, Rajita, Calmon, Marilia Freitas, Danilova, Ludmila, Nelkenbrecher, Claudia, Van Neste, Leander, Bijsmans, Ingrid T G W, Van Engeland, Manon, Gabrielson, Edward, Schuebel, Kornel E, Winterpacht, Andreas, Baylin, Stephen B, Herman, James G, Ahuja, Nita

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A Four-Gene Promoter Methylation Marker Panel Consisting of GREM1, NEURL, LAD1, and NEFH Predicts Survival of Clear Cell Renal Cell Cancer Patients von van Vlodrop, Iris J H, Joosten, Sophie C, De Meyer, Tim, Smits, Kim M, Van Neste, Leander, Melotte, Veerle, Baldewijns, Marcella M L L, Schouten, Leo J, van den Brandt, Piet A, Jeschke, Jana, Yi, Joo Mi, Schuebel, Kornel E, Ahuja, Nita, Herman, James G, Aarts, Maureen J, Bosman, Fred T, Van Criekinge, Wim, van Engeland, Manon

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