A role for surface hydrophobicity in protein‐protein recognition von Young, L., Jernigan, R.L., Covell, D.G.

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Possible alternative and extension to the use of dynamics for structure matching von Jernigan, R.L.

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Anisotropy of Fluctuation Dynamics of Proteins with an Elastic Network Model von Atilgan, A.R., Durell, S.R., Jernigan, R.L., Demirel, M.C., Keskin, O., Bahar, I.

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Protein secondary structure prediction based on the GOR algorithm incorporating multiple sequence alignment information von KLOCZKOWSKI, A, TING, K.-L, JERNIGAN, R. L, GARNIER, J

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Combining the GOR V algorithm with evolutionary information for protein secondary structure prediction from amino acid sequence von Kloczkowski, A., Ting, K.-L., Jernigan, R.L., Garnier, J.

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Possible alternative and extension to the use of dynamics for structure matching: Comment on “Comparing proteins by their internal dynamics: Exploring structure–function relationsh... von Jernigan, R.L.

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Proteins with Similar Architecture Exhibit Similar Large-Scale Dynamic Behavior von Keskin, O., Jernigan, R.L., Bahar, I.

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Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation 1 1 Edited by B. Honig von Bahar, I., Jernigan, R.L.

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Protein sequence entropy is closely related to packing density and hydrophobicity von Liao, H., Yeh, W., Chiang, D., Jernigan, R.L., Lustig, B.

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Short-range conformational energies, secondary structure propensities, and recognition of correct sequence-structure matches von Bahar, I., Kaplan, M., Jernigan, R.L.

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Sequence-Dependent B↔A Transition in DNA Evaluated with Dimeric and Trimeric Scales von Tolstorukov, M.Y., Ivanov, V.I., Malenkov, G.G., Jernigan, R.L., Zhurkin, V.B.

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A preference‐based free‐energy parameterization of enzyme‐inhibitor binding. Applications to HIV‐1‐protease inhibitor design von Wallqvist, A., Jernigan, R.L., Covell, D.G.

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A Parallel DNA Triplex as model for the Intermediate in Homologous Recombination von Zhurkin, V.B., Raghunathan, G., Ulyanov, N.B., Camerini-Otero, R.D., Jernigan, R.L.

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Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation11Edited by B. Honig von Bahar, I., Jernigan, R.L.

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Distance-dependent dielectric constants and their application to double-helical DNA von Mazur, J, Jernigan, R.L

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Comparison of rotation models for describing DNA conformations: application to static and polymorphic forms von Mazur, J., Jernigan, R.L.

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Interdependence of conformational variables in double-helical DNA von Sarai, A., Jernigan, R.L., Mazur, J.

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Constructing optimal backbone segments for joining fixed DNA base pairs von Mazur, J., Jernigan, R.L., Sarai, A.

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Cooperative structural transitions induced by non-homogeneous intramolecular interactions in compact globular proteins von Bahar, I., Jernigan, R.L.

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Stabilization of intermediate density states in globular proteins by homogeneous intramolecular attractive interactions von Bahar, I., Jernigan, R.L.

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