Encoding and Decoding Cellular Information through Signaling Dynamics von Purvis, Jeremy E., Lahav, Galit

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p53 Dynamics Control Cell Fate von Purvis, Jeremy E., Karhohs, Kyle W., Mock, Caroline, Batchelor, Eric, Loewer, Alexander, Lahav, Galit

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Genetic determinants of cellular addiction to DNA polymerase theta von Feng, Wanjuan, Simpson, Dennis A., Carvajal-Garcia, Juan, Price, Brandon A., Kumar, Rashmi J., Mose, Lisle E., Wood, Richard D., Rashid, Naim, Purvis, Jeremy E., Parker, Joel S., Ramsden, Dale A., Gupta, Gaorav P.

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Cellograph: a semi-supervised approach to analyzing multi-condition single-cell RNA-sequencing data using graph neural networks von Shahir, Jamshaid A, Stanley, Natalie, Purvis, Jeremy E

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An integrative transcriptomics approach identifies miR-503 as a candidate master regulator of the estrogen response in MCF-7 breast cancer cells von Baran-Gale, Jeanette, Purvis, Jeremy E, Sethupathy, Praveen

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Integrating temporal single-cell gene expression modalities for trajectory inference and disease prediction von Ranek, Jolene S, Stanley, Natalie, Purvis, Jeremy E

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p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics von Hafner, Antonina, Stewart-Ornstein, Jacob, Purvis, Jeremy E, Forrester, William C, Bulyk, Martha L, Lahav, Galit

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Evidence that the human cell cycle is a series of uncoupled, memoryless phases von Chao, Hui Xiao, Fakhreddin, Randy I, Shimerov, Hristo K, Kedziora, Katarzyna M, Kumar, Rashmi J, Perez, Joanna, Limas, Juanita C, Grant, Gavin D, Cook, Jeanette Gowen, Gupta, Gaorav P, Purvis, Jeremy E

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Inferring the structures of signaling motifs from paired dynamic traces of single cells von Haggerty, Raymond A, Purvis, Jeremy E

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A Proximal-to-Distal Survey of Healthy Adult Human Small Intestine and Colon Epithelium by Single-Cell Transcriptomics von Burclaff, Joseph, Bliton, R. Jarrett, Breau, Keith A., Ok, Meryem T., Gomez-Martinez, Ismael, Ranek, Jolene S., Bhatt, Aadra P., Purvis, Jeremy E., Woosley, John T., Magness, Scott T.

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Orchestration of DNA Damage Checkpoint Dynamics across the Human Cell Cycle von Chao, Hui Xiao, Poovey, Cere E., Privette, Ashley A., Grant, Gavin D., Chao, Hui Yan, Cook, Jeanette G., Purvis, Jeremy E.

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DELVE: feature selection for preserving biological trajectories in single-cell data von Ranek, Jolene S., Stallaert, Wayne, Milner, J. Justin, Redick, Margaret, Wolff, Samuel C., Beltran, Adriana S., Stanley, Natalie, Purvis, Jeremy E.

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The molecular architecture of cell cycle arrest von Stallaert, Wayne, Taylor, Sovanny R, Kedziora, Katarzyna M, Taylor, Colin D, Sobon, Holly K, Young, Catherine L, Limas, Juanita C, Varblow Holloway, Jonah, Johnson, Martha S, Cook, Jeanette Gowen, Purvis, Jeremy E

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Rapid DNA replication origin licensing protects stem cell pluripotency von Matson, Jacob Peter, Dumitru, Raluca, Coryell, Philip, Baxley, Ryan M, Chen, Weili, Twaroski, Kirk, Webber, Beau R, Tolar, Jakub, Bielinsky, Anja-Katrin, Purvis, Jeremy E, Cook, Jeanette Gowen

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Decoding the Insulin Signal von Purvis, Jeremy E., Lahav, Galit

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Cyclin F drives proliferation through SCF-dependent degradation of the retinoblastoma-like tumor suppressor p130/RBL2 von Enrico, Taylor P, Stallaert, Wayne, Wick, Elizaveta T, Ngoi, Peter, Wang, Xianxi, Rubin, Seth M, Brown, Nicholas G, Purvis, Jeremy E, Emanuele, Michael J

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Inheritance of OCT4 predetermines fate choice in human embryonic stem cells von Wolff, Samuel C, Kedziora, Katarzyna M, Dumitru, Raluca, Dungee, Cierra D, Zikry, Tarek M, Beltran, Adriana S, Haggerty, Rachel A, Cheng, JrGang, Redick, Margaret A, Purvis, Jeremy E

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Natural language processing: put your model where your mouth is von Haggerty, Rachel A, Purvis, Jeremy E

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Chemical screen for epigenetic barriers to single allele activation of Oct4 von Headley, Kathryn M., Kedziora, Katarzyna M., Alejo, Aidin, Lai, Elianna Zhi-Xiang, Purvis, Jeremy E., Hathaway, Nathaniel A.

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Accurate delineation of cell cycle phase transitions in living cells with PIP-FUCCI von Grant, Gavin D., Kedziora, Katarzyna M., Limas, Juanita C., Cook, Jeanette Gowen, Purvis, Jeremy E.

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