A scalable high-throughput targeted next-generation sequencing assay for comprehensive genomic profiling of solid tumors von Conroy, Jeffrey M, Pabla, Sarabjot, Glenn, Sean T, Seager, R J, Van Roey, Erik, Gao, Shuang, Burgher, Blake, Andreas, Jonathan, Giamo, Vincent, Mallon, Melissa, Lee, Yong Hee, DePietro, Paul, Nesline, Mary, Wang, Yirong, Lenzo, Felicia L, Klein, Roger, Zhang, Shengle

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Clinical and Biologic Correlates of ADORA2A Transcriptomic Expression in Cancer von Shreenivas, Aditya, Nishizaki, Daisuke, Lee, Suzanna, Pabla, Sarabjot, Nesline, Mary, Conroy, Jeffrey M, DePietro, Paul, Kato, Shumei, Kurzrock, Razelle

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Analytical Validation of a Next-Generation Sequencing Assay to Monitor Immune Responses in Solid Tumors von Conroy, Jeffrey M., Pabla, Sarabjot, Glenn, Sean T., Burgher, Blake, Nesline, Mary, Papanicolau-Sengos, Antonios, Andreas, Jonathan, Giamo, Vincent, Lenzo, Felicia L., Hyland, Fiona C.L., Omilian, Angela, Bshara, Wiam, Qin, Moachun, He, Ji, Puzanov, Igor, Ernstoff, Marc S., Gardner, Mark, Galluzzi, Lorenzo, Morrison, Carl

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LAG‐3 transcriptomic expression patterns across malignancies: Implications for precision immunotherapeutics von Adashek, Jacob J., Kato, Shumei, Nishizaki, Daisuke, Miyashita, Hirotaka, De, Pradip, Lee, Suzanna, Pabla, Sarabjot, Nesline, Mary, Conroy, Jeffrey M., DePietro, Paul, Lippman, Scott, Kurzrock, Razelle

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Whole-genome sequencing identifies genomic heterogeneity at a nucleotide and chromosomal level in bladder cancer von Morrison, Carl D, Liu, Pengyuan, Woloszynska-Read, Anna, Zhang, Jianmin, Luo, Wei, Qin, Maochun, Bshara, Wiam, Conroy, Jeffrey M, Sabatini, Linda, Vedell, Peter, Xiong, Donghai, Liu, Song, Wang, Jianmin, Shen, He, Li, Yinwei, Omilian, Angela R, Hill, Annette, Head, Karen, Guru, Khurshid, Kunnev, Dimiter, Leach, Robert, Eng, Kevin H, Darlak, Christopher, Hoeflich, Christopher, Veeranki, Srividya, Glenn, Sean, You, Ming, Pruitt, Steven C, Johnson, Candace S, Trump, Donald L

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Indoleamine 2,3-dioxygenase (IDO) inhibitors and cancer immunotherapy von Fujiwara, Yu, Kato, Shumei, Nesline, Mary K, Conroy, Jeffrey M, DePietro, Paul, Pabla, Sarabjot, Kurzrock, Razelle

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Cancer testis antigen burden (CTAB): a novel biomarker of tumor-associated antigens in lung cancer von Seager, R J, Senosain, Maria-Fernanda, Van Roey, Erik, Gao, Shuang, DePietro, Paul, Nesline, Mary K, Dash, Durga Prasad, Zhang, Shengle, Ko, Heidi, Hastings, Stephanie B, Strickland, Kyle C, Previs, Rebecca A, Jensen, Taylor J, Eisenberg, Marcia, Caveney, Brian J, Severson, Eric A, Ramkissoon, Shakti, Conroy, Jeffrey M, Pabla, Sarabjot

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High CTLA-4 transcriptomic expression correlates with high expression of other checkpoints and with immunotherapy outcome von Krishnamurthy, Nithya, Nishizaki, Daisuke, Lippman, Scott M, Miyashita, Hirotaka, Nesline, Mary K, Pabla, Sarabjot, Conroy, Jeffrey M, DePietro, Paul, Kato, Shumei, Kurzrock, Razelle

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Case report: Single gene testing and comprehensive genomic profiling in non-small cell lung cancer-a case series of divergent results from a large reference laboratory von Strickland, Kyle C, Nesline, Mary K, Previs, Rebecca A, Ko, Heidi, Cooper, Maureen, Rushton, Jennifer R, Wallen, Zachary D, Pabla, Sarabjot, Conroy, Jeffrey M, Sausen, Mark, Saini, Kamal S, Cantini, Luca, Jensen, Taylor J, Caveney, Brian J, Eisenberg, Marcia, Severson, Eric A, Ramkissoon, Shakti

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Pan‐cancer analysis of TIM‐3 transcriptomic expression reveals high levels in pancreatic cancer and interpatient heterogeneity von Lim, Jungah, Kurzrock, Razelle, Nishizaki, Daisuke, Miyashita, Hirotaka, Adashek, Jacob J., Lee, Suzanna, Pabla, Sarabjot, Nesline, Mary, Conroy, Jeffrey M., DePietro, Paul, Lippman, Scott M., Kato, Shumei

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Development and analytical validation of a next-generation sequencing based microsatellite instability (MSI) assay von Pabla, Sarabjot, Andreas, Jonathan, Lenzo, Felicia L, Burgher, Blake, Hagen, Jacob, Giamo, Vincent, Nesline, Mary K, Wang, Yirong, Gardner, Mark, Conroy, Jeffrey M, Papanicolau-Sengos, Antonios, Morrison, Carl, Glenn, Sean T

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Robust detection of immune transcripts in FFPE samples using targeted RNA sequencing von Paluch, Benjamin E, Glenn, Sean T, Conroy, Jeffrey M, Papanicolau-Sengos, Antonios, Bshara, Wiam, Omilian, Angela R, Brese, Elizabeth, Nesline, Mary, Burgher, Blake, Andreas, Jonathan, Odunsi, Kunle, Eng, Kevin, He, Ji, Qin, Maochun, Gardner, Mark, Galluzzi, Lorenzo, Morrison, Carl D

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T-cell priming transcriptomic markers: implications of immunome heterogeneity for precision immunotherapy von Miyashita, Hirotaka, Kurzrock, Razelle, Bevins, Nicholas J., Thangathurai, Kartheeswaran, Lee, Suzanna, Pabla, Sarabjot, Nesline, Mary, Glenn, Sean T., Conroy, Jeffrey M., DePietro, Paul, Rubin, Eitan, Sicklick, Jason K., Kato, Shumei

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4‐1BB transcriptomic expression patterns across malignancies: Implications for clinical trials of 4‐1BB agonists von Uehara, Yuji, Kato, Shumei, Nishizaki, Daisuke, Miyashita, Hirotaka, Lee, Suzanna, Nesline, Mary K., Pabla, Sarabjot, Conroy, Jeffrey M., DePietro, Paul, Ko, Heidi, Sicklick, Jason K., Kurzrock, Razelle

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High indoleamine 2,3-dioxygenase transcript levels predict better outcome after front-line cancer immunotherapy von Fujiwara, Yu, Kato, Shumei, Nishizaki, Daisuke, Miyashita, Hirotaka, Lee, Suzanna, Nesline, Mary K., Conroy, Jeffrey M., DePietro, Paul, Pabla, Sarabjot, Lippman, Scott M., Kurzrock, Razelle

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T-cell receptor beta variable gene polymorphism predicts immune-related adverse events during checkpoint blockade immunotherapy von Stephen, Bettzy, Hajjar, Joud, Sarda, Shrutii, Duose, Dzifa Yawa, Conroy, Jeffrey M, Morrison, Carl, Alshawa, Anas, Xu, Mingxuan, Zarifa, Abdulrazzak, Patel, Sapna P, Yuan, Ying, Kwiatkowski, Evan, Wang, Linghua, Rodon Ahnert, Jordi, Fu, Siqing, Meric-Bernstam, Funda, Lowman, Geoffrey M, Looney, Timothy, Naing, Aung

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OSAT: a tool for sample-to-batch allocations in genomics experiments von Yan, Li, Ma, Changxing, Wang, Dan, Hu, Qiang, Qin, Maochun, Conroy, Jeffrey M, Sucheston, Lara E, Ambrosone, Christine B, Johnson, Candace S, Wang, Jianmin, Liu, Song

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PD-L2 amplification and durable disease stabilization in patient with urothelial carcinoma receiving pembrolizumab von George, Saby, Papanicolau-Sengos, Antonios, Lenzo, Felicia L, Conroy, Jeffrey M, Nesline, Mary, Pabla, Sarabjot, Glenn, Sean T, Burgher, Blake, Andreas, Jonathan, Giamo, Vincent, Qin, Moachun, Wang, Yirong, Galluzzi, Lorenzo, Morrison, Carl

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Structural variation discovery in the cancer genome using next generation sequencing: computational solutions and perspectives von Liu, Biao, Conroy, Jeffrey M, Morrison, Carl D, Odunsi, Adekunle O, Qin, Maochun, Wei, Lei, Trump, Donald L, Johnson, Candace S, Liu, Song, Wang, Jianmin

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Integration of tumor inflammation, cell proliferation, and traditional biomarkers improves prediction of immunotherapy resistance and response von Pabla, Sarabjot, Seager, R J, Van Roey, Erik, Gao, Shuang, Hoefer, Carrie, Nesline, Mary K, DePietro, Paul, Burgher, Blake, Andreas, Jonathan, Giamo, Vincent, Wang, Yirong, Lenzo, Felicia L, Schoenborn, Margot, Zhang, Shengle, Klein, Roger, Glenn, Sean T, Conroy, Jeffrey M

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