Attachment between heterotrophic bacteria and microalgae influences symbiotic microscale interactions von Samo, Ty J., Kimbrel, Jeffrey A., Nilson, Daniel J., Pett‐Ridge, Jennifer, Weber, Peter K., Mayali, Xavier

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Combining multiple functional annotation tools increases coverage of metabolic annotation von Griesemer, Marc, Kimbrel, Jeffrey A, Zhou, Carol E, Navid, Ali, D'haeseleer, Patrik

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Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies von Avila-Herrera, Aram, Kimbrel, Jeffrey A, Manuel Martí, Jose, Thissen, James, Saada, Edwin A, Weisenberger, Tracy, Arrildt, Kathryn T, Segelke, Brent W, Allen, Jonathan E, Zemla, Adam, Borucki, Monica K

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Active virus-host interactions at sub-freezing temperatures in Arctic peat soil von Trubl, Gareth, Kimbrel, Jeffrey A, Liquet-Gonzalez, Jose, Nuccio, Erin E, Weber, Peter K, Pett-Ridge, Jennifer, Jansson, Janet K, Waldrop, Mark P, Blazewicz, Steven J

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HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi von Nuccio, Erin E, Blazewicz, Steven J, Lafler, Marissa, Campbell, Ashley N, Kakouridis, Anne, Kimbrel, Jeffrey A, Wollard, Jessica, Vyshenska, Dariia, Riley, Robert, Tomatsu, Andy, Hestrin, Rachel, Malmstrom, Rex R, Firestone, Mary, Pett-Ridge, Jennifer

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Mutualistic co-evolution of type III effector genes in Sinorhizobium fredii and Bradyrhizobium japonicum von Kimbrel, Jeffrey A, Thomas, William J, Jiang, Yuan, Creason, Allison L, Thireault, Caitlin A, Sachs, Joel L, Chang, Jeff H

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Microbial Community Structure and Functional Potential Along a Hypersaline Gradient von Kimbrel, Jeffrey A, Ballor, Nicholas, Wu, Yu-Wei, David, Maude M, Hazen, Terry C, Simmons, Blake A, Singer, Steven W, Jansson, Janet K

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Melanization slows the rapid movement of fungal necromass carbon and nitrogen into both bacterial and fungal decomposer communities and soils von Maillard, François, Michaud, Talia J, See, Craig R, DeLancey, Lang C, Blazewicz, Steven J, Kimbrel, Jeffrey A, Pett-Ridge, Jennifer, Kennedy, Peter G

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Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems von Greenlon, Alex, Sieradzki, Ella, Zablocki, Olivier, Koch, Benjamin J, Foley, Megan M, Kimbrel, Jeffrey A, Hungate, Bruce A, Blazewicz, Steven J, Nuccio, Erin E, Sun, Christine L, Chew, Aaron, Mancilla, Cynthia-Jeanette, Sullivan, Matthew B, Firestone, Mary, Pett-Ridge, Jennifer, Banfield, Jillian F

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An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6 von Kimbrel, Jeffrey A, Givan, Scott A, Halgren, Anne B, Creason, Allison L, Mills, Dallice I, Banowetz, Gary M, Armstrong, Donald J, Chang, Jeff H

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GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences von Cumbie, Jason S, Kimbrel, Jeffrey A, Di, Yanming, Schafer, Daniel W, Wilhelm, Larry J, Fox, Samuel E, Sullivan, Christopher M, Curzon, Aron D, Carrington, James C, Mockler, Todd C, Chang, Jeff H

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Bacterial Community Assembly, Succession, and Metabolic Function during Outdoor Cultivation of Microchloropsis salina von Morris, Megan M., Kimbrel, Jeffrey A., Geng, Haifeng, Tran-Gyamfi, Mary Bao, Yu, Eizadora T., Sale, Kenneth L., Lane, Todd W., Mayali, Xavier

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Terabase-Scale Coassembly of a Tropical Soil Microbiome von Riley, Robert, Bowers, Robert M, Camargo, Antonio Pedro, Campbell, Ashley, Egan, Rob, Eloe-Fadrosh, Emiley A, Foster, Brian, Hofmeyr, Steven, Huntemann, Marcel, Kellom, Matthew, Kimbrel, Jeffrey A, Oliker, Leonid, Yelick, Katherine, Pett-Ridge, Jennifer, Salamov, Asaf, Varghese, Neha J, Clum, Alicia

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Copper Delivery by the Copper Chaperone for Chloroplast and Cytosolic Copper/Zinc- Superoxide Dismutases： Regulation and Unexpected Phenotypes in an Arabidopsis Mutant von Cohu, Christopher M., Abdel-Ghany, Salah E., Gogolin Reynolds, Kathryn A., Onofrio, Alexander M., Bodecker, Jared R., Kimbrel, Jeffrey A., Niyogi, Krishna K., Pilon, Marinus

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes von Seaver, Samuel M D, Liu, Filipe, Zhang, Qizhi, Jeffryes, James, Faria, José P, Edirisinghe, Janaka N, Mundy, Michael, Chia, Nicholas, Noor, Elad, Beber, Moritz E, Best, Aaron A, DeJongh, Matthew, Kimbrel, Jeffrey A, D’haeseleer, Patrik, McCorkle, Sean R, Bolton, Jay R, Pearson, Erik, Canon, Shane, Wood-Charlson, Elisha M, Cottingham, Robert W, Arkin, Adam P, Henry, Christopher S

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Plant-associated fungi support bacterial resilience following water limitation von Hestrin, Rachel, Kan, Megan, Lafler, Marissa, Wollard, Jessica, Kimbrel, Jeffrey A., Ray, Prasun, Blazewicz, Steven J., Stuart, Rhona, Craven, Kelly, Firestone, Mary, Nuccio, Erin E., Pett-Ridge, Jennifer

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Bacterial response to spatial gradients of algal-derived nutrients in a porous microplate von Kim, Hyungseok, Kimbrel, Jeffrey A., Vaiana, Christopher A., Wollard, Jessica R., Mayali, Xavier, Buie, Cullen R.

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Coastal bacteria and protists assimilate viral carbon and nitrogen von Martínez Martínez, Joaquín, Talmy, David, Kimbrel, Jeffrey A, Weber, Peter K, Mayali, Xavier

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Prokaryotic Genome Annotation von Kimbrel, Jeffrey A., Jeffrey, Brendan M., Ward, Christopher S.

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Microbiome processing of organic nitrogen input supports growth and cyanotoxin production of Microcystis aeruginosa cultures von Li, Wei, Baliu-Rodriguez, David, Premathilaka, Sanduni H, Thenuwara, Sharmila I, Kimbrel, Jeffrey A, Samo, Ty J, Ramon, Christina, Kiledal, Erik Anders, Rivera, Sara R, Kharbush, Jenan, Isailovic, Dragan, Weber, Peter K, Dick, Gregory J, Mayali, Xavier

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