Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content von Springer, Nathan M, Ying, Kai, Fu, Yan, Ji, Tieming, Yeh, Cheng-Ting, Jia, Yi, Wu, Wei, Richmond, Todd, Kitzman, Jacob, Rosenbaum, Heidi, Iniguez, A Leonardo, Barbazuk, W Brad, Jeddeloh, Jeffrey A, Nettleton, Daniel, Schnable, Patrick S

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The Arabidopsis thaliana mobilome and its impact at the species level von Quadrana, Leandro, Bortolini Silveira, Amanda, Mayhew, George F, LeBlanc, Chantal, Martienssen, Robert A, Jeddeloh, Jeffrey A, Colot, Vincent

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Somatic retrotransposition alters the genetic landscape of the human brain von Baillie, J. Kenneth, Barnett, Mark W., Upton, Kyle R., Gerhardt, Daniel J., Richmond, Todd A., De Sapio, Fioravante, Brennan, Paul M., Rizzu, Patrizia, Smith, Sarah, Fell, Mark, Talbot, Richard T., Gustincich, Stefano, Freeman, Thomas C., Mattick, John S., Hume, David A., Heutink, Peter, Carninci, Piero, Jeddeloh, Jeffrey A., Faulkner, Geoffrey J.

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Targeted RNA sequencing reveals the deep complexity of the human transcriptome von Mercer, Tim R, Gerhardt, Daniel J, Dinger, Marcel E, Crawford, Joanna, Trapnell, Cole, Jeddeloh, Jeffrey A, Mattick, John S, Rinn, John L

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A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes von Jordan, Katherine W, Wang, Shichen, Lun, Yanni, Gardiner, Laura-Jayne, MacLachlan, Ron, Hucl, Pierre, Wiebe, Krysta, Wong, Debbie, Forrest, Kerrie L, Sharpe, Andrew G, Sidebottom, Christine Hd, Hall, Neil, Toomajian, Christopher, Close, Timothy, Dubcovsky, Jorge, Akhunova, Alina, Talbert, Luther, Bansal, Urmil K, Bariana, Harbans S, Hayden, Matthew J, Pozniak, Curtis, Jeddeloh, Jeffrey A, Hall, Anthony, Akhunov, Eduard

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Comprehensive high-throughput arrays for relative methylation (CHARM) von Irizarry, Rafael A, Ladd-Acosta, Christine, Carvalho, Benilton, Wu, Hao, Brandenburg, Sheri A, Jeddeloh, Jeffrey A, Wen, Bo, Feinberg, Andrew P

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Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond von Mascher, Martin, Richmond, Todd A., Gerhardt, Daniel J., Himmelbach, Axel, Clissold, Leah, Sampath, Dharanya, Ayling, Sarah, Steuernagel, Burkhard, Pfeifer, Matthias, D'Ascenzo, Mark, Akhunov, Eduard D., Hedley, Pete E., Gonzales, Ana M., Morrell, Peter L., Kilian, Benjamin, Blattner, Frank R., Scholz, Uwe, Mayer, Klaus F.X., Flavell, Andrew J., Muehlbauer, Gary J., Waugh, Robbie, Jeddeloh, Jeffrey A., Stein, Nils

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Genetic Perturbation of the Maize Methylome von Li, Qing, Eichten, Steven R., Hermanson, Peter J., Zaunbrecher, Virginia M., Song, Jawon, Wendt, Jennifer, Rosenbaum, Heidi, Madzima, Thelma F., Sloan, Amy E., Huang, Ji, Burgess, Daniel L., Richmond, Todd A., McGinnis, Karen M., Meeley, Robert B., Danilevskaya, Olga N., Vaughn, Matthew W., Kaeppler, Shawn M., Jeddeloh, Jeffrey A., Springer, Nathan M.

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Heritable L1 retrotransposition in the mouse primordial germline and early embryo von Richardson, Sandra R, Gerdes, Patricia, Gerhardt, Daniel J, Sanchez-Luque, Francisco J, Bodea, Gabriela-Oana, Muñoz-Lopez, Martin, Jesuadian, J Samuel, Kempen, Marie-Jeanne H C, Carreira, Patricia E, Jeddeloh, Jeffrey A, Garcia-Perez, Jose L, Kazazian, Jr, Haig H, Ewing, Adam D, Faulkner, Geoffrey J

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Extreme‐phenotype genome‐wide association study (XP‐GWAS): a method for identifying trait‐associated variants by sequencing pools of individuals selected from a diversity panel... von Yang, Jinliang, Jiang, Haiying, Yeh, Cheng‐Ting, Yu, Jianming, Jeddeloh, Jeffrey A., Nettleton, Dan, Schnable, Patrick S.

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Whole exome capture in solution with 3 Gbp of data von Bainbridge, Matthew N, Wang, Min, Burgess, Daniel L, Kovar, Christie, Rodesch, Matthew J, D'Ascenzo, Mark, Kitzman, Jacob, Wu, Yuan-Qing, Newsham, Irene, Richmond, Todd A, Jeddeloh, Jeffrey A, Muzny, Donna, Albert, Thomas J, Gibbs, Richard A

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Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes von McHale, Leah K., Haun, William J., Xu, Wayne W., Bhaskar, Pudota B., Anderson, Justin E., Hyten, David L., Gerhardt, Daniel J., Jeddeloh, Jeffrey A., Stupar, Robert M.

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Identification of novel high-frequency DNA methylation changes in breast cancer von Ordway, Jared M, Budiman, Muhammad A, Korshunova, Yulia, Maloney, Rebecca K, Bedell, Joseph A, Citek, Robert W, Bacher, Blaire, Peterson, Seth, Rohlfing, Tracy, Hall, Jacqueline, Brown, Robert, Lakey, Nathan, Doerge, Rebecca W, Martienssen, Robert A, Leon, Jorge, McPherson, John D, Jeddeloh, Jeffrey A

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Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis von Boyle, Shelagh, Rodesch, Matthew J, Halvensleben, Heather A, Jeddeloh, Jeffrey A, Bickmore, Wendy A

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Targeted Bisulfite Sequencing Using the SeqCap Epi Enrichment System von Wendt, Jennifer, Rosenbaum, Heidi, Richmond, Todd A., Jeddeloh, Jeffrey A., Burgess, Daniel L.

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Phenotypic and Genomic Analyses of a Fast Neutron Mutant Population Resource in Soybean von Bolon, Yung-Tsi, Haun, William J, Xu, Wayne W, Grant, David, Stacey, Minviluz G, Nelson, Rex T, Gerhardt, Daniel J, Jeddeloh, Jeffrey A, Stacey, Gary, Muehlbauer, Gary J, Orf, James H, Naeve, Seth L, Stupar, Robert M, Vance, Carroll P

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Targeted re-sequencing of the allohexaploid wheat exome von Winfield, Mark O., Wilkinson, Paul A., Allen, Alexandra M., Barker, Gary L. A., Coghill, Jane A., Burridge, Amanda, Hall, Anthony, Brenchley, Rachael C., D'Amore, Rosalinda, Hall, Neil, Bevan, Michael W., Richmond, Todd, Gerhardt, Daniel J., Jeddeloh, Jeffrey A., Edwards, Keith J.

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RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships von Nadel, Julie, Athanasiadou, Rodoniki, Lemetre, Christophe, Wijetunga, N Ari, Ó Broin, Pilib, Sato, Hanae, Zhang, Zhengdong, Jeddeloh, Jeffrey, Montagna, Cristina, Golden, Aaron, Seoighe, Cathal, Greally, John M

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Maintenance of genomic methylation requires a SWI2/SNF2-like protein von Richards, Eric J, Jeddeloh, Jeffrey A, Stokes, Trevor L

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Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82 von Haun, William J, Hyten, David L, Xu, Wayne W, Gerhardt, Daniel J, Albert, Thomas J, Richmond, Todd, Jeddeloh, Jeffrey A, Jia, Gaofeng, Springer, Nathan M, Vance, Carroll P, Stupar, Robert M

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