Multilab Validation Report for the Verification and Subtyping of Listeria monocytogenes Using qPCR von Pamboukian, Ruiqing, Ferguson, Martine, Jarvis, Karen, Grocholl, John, Burall, Laurel

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Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak von Ottesen, Andrea, Ramachandran, Padmini, Reed, Elizabeth, White, James R, Hasan, Nur, Subramanian, Poorani, Ryan, Gina, Jarvis, Karen, Grim, Christopher, Daquiqan, Ninalynn, Hanes, Darcy, Allard, Marc, Colwell, Rita, Brown, Eric, Chen, Yi

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Recent and emerging innovations in Salmonella detection: a food and environmental perspective von Bell, Rebecca L., Jarvis, Karen G., Ottesen, Andrea R., McFarland, Melinda A., Brown, Eric W.

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Microbiomes Associated With Foods From Plant and Animal Sources von Jarvis, Karen G, Daquigan, Ninalynn, White, James R, Morin, Paul M, Howard, Laura M, Manetas, Julia E, Ottesen, Andrea, Ramachandran, Padmini, Grim, Christopher J

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Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States von Stevens, Eric L, Carleton, Heather A, Beal, Jennifer, Tillman, Glenn E, Lindsey, Rebecca L, Lauer, A C, Pightling, Arthur, Jarvis, Karen G, Ottesen, Andrea, Ramachandran, Padmini, Hintz, Leslie, Katz, Lee S, Folster, Jason P, Whichard, Jean M, Trees, Eija, Timme, Ruth E, McDERMOTT, Patrick, Wolpert, Beverly, Bazaco, Michael, Zhao, Shaohua, Lindley, Sabina, Bruce, Beau B, Griffin, Patricia M, Brown, Eric, Allard, Marc, Tallent, Sandra, Irvin, Kari, Hoffmann, Maria, Wise, Matt, Tauxe, Robert, Gerner-Smidt, Peter, Simmons, Mustafa, Kissler, Bonnie, Defibaugh-Chavez, Stephanie, Klimke, William, Agarwala, Richa, Lindsay, James, Cook, Kimberly, Austerman, Suelee Robbe, Goldman, David, McGARRY, Sherri, Hale, Kis Robertson, Dessai, Uday, Musser, Steven M, Braden, Chris

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Microbiome Population Dynamics of Cold-Smoked Sockeye Salmon during Refrigerated Storage and after Culture Enrichment von Jarvis, Karen G, Hsu, Chiun-Kang, Pettengill, James B, Ihrie, John, Karathia, Hiren, Hasan, Nur A, Grim, Christopher J

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The Complete Mitochondrial Genome of the Foodborne Parasitic Pathogen Cyclospora cayetanensis von Cinar, Hediye Nese, Gopinath, Gopal, Jarvis, Karen, Murphy, Helen R

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Early Recovery of Salmonella from Food Using a 6-Hour Non-selective Pre-enrichment and Reformulation of Tetrathionate Broth von Daquigan, Ninalynn, Grim, Christopher J, White, James R, Hanes, Darcy E, Jarvis, Karen G

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Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation von Grim, Christopher J, Kotewicz, Michael L, Power, Karen A, Gopinath, Gopal, Franco, Augusto A, Jarvis, Karen G, Yan, Qiong Q, Jackson, Scott A, Sathyamoorthy, Venugopal, Hu, Lan, Pagotto, Franco, Iversen, Carol, Lehner, Angelika, Stephan, Roger, Fanning, Séamus, Tall, Ben D

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Research Note: Effect of butyric acid glycerol esters on ileal and cecal mucosal and luminal microbiota in chickens challenged with Eimeria maxima von Proszkowiec-Weglarz, Monika, Miska, Katarzyna B., Schreier, Lori L., Grim, Christopher J., Jarvis, Karen G., Shao, Jonathan, Vaessen, Stefan, Sygall, Richard, Jenkins, Mark C., Kahl, Stanislaw, Russell, Beverly

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Analysis of the cellulose synthase operon genes, bcsA, bcsB, and bcsC in Cronobacter species: Prevalence among species and their roles in biofilm formation and cell–cell aggregatio... von Hu, Lan, Grim, Christopher J., Franco, Augusto A., Jarvis, Karen G., Sathyamoorthy, Vengopal, Kothary, Mahendra H., McCardell, Barbara A., Tall, Ben D.

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High-Resolution Microbiome Profiling for Detection and Tracking of Salmonella enterica von Grim, Christopher J, Daquigan, Ninalynn, Lusk Pfefer, Tina S, Ottesen, Andrea R, White, James R, Jarvis, Karen G

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Application of quasimetagenomics methods to define microbial diversity and subtype Listeria monocytogenes in dairy and seafood production facilities von Kocurek, Brandon, Ramachandran, Padmini, Grim, Christopher J, Morin, Paul, Howard, Laura, Ottesen, Andrea, Timme, Ruth, Leonard, Susan R, Rand, Hugh, Strain, Errol, Tadesse, Daniel, Pettengill, James B, Lacher, David W, Mammel, Mark, Jarvis, Karen G

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Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing von Jarvis, Karen G, White, James R, Grim, Christopher J, Ewing, Laura, Ottesen, Andrea R, Beaubrun, Junia Jean-Gilles, Pettengill, James B, Brown, Eric, Hanes, Darcy E

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Whole Genome DNA Sequence Analysis of Salmonella subspecies enterica serotype Tennessee obtained from related peanut butter foodborne outbreaks von Wilson, Mark R, Brown, Eric, Keys, Chris, Strain, Errol, Luo, Yan, Muruvanda, Tim, Grim, Christopher, Jean-Gilles Beaubrun, Junia, Jarvis, Karen, Ewing, Laura, Gopinath, Gopal, Hanes, Darcy, Allard, Marc W, Musser, Steven

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A longitudinal study to examine the influence of farming practices and environmental factors on pathogen prevalence using structural equation modeling von Ferguson, Martine, Hsu, Chiun-Kang, Grim, Christopher, Kauffman, Michael, Jarvis, Karen, Pettengill, James B, Babu, Uma S, Harrison, Lisa M, Li, Baoguang, Hayford, Alice, Balan, Kannan V, Freeman, Josefina P, Rajashekara, Gireesh, Lipp, Erin K, Rozier, Ralph Scott, Zimeri, Anne Marie, Burall, Laurel S

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bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting von Konganti, Kranti, Reed, Elizabeth, Mammel, Mark, Kayikcioglu, Tunc, Binet, Rachel, Jarvis, Karen, Ferreira, Christina M., Bell, Rebecca L., Zheng, Jie, Windsor, Amanda M., Ottesen, Andrea, Grim, Christopher J., Ramachandran, Padmini

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The complete sequence of the locus of enterocyte effacement (LEE) from enteropathogenic Escherichia coli E2348/69 von Elliott, Simon J., Wainwright, Leslie A., McDaniel, Timothy K., Jarvis, Karen G., Deng, YingKang, Lai, Li‐Ching, McNamara, Barry P., Donnenberg, Michael S., Kaper, James B.

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A proposed harmonized LPS molecular-subtyping scheme for Cronobacter species von Yan, Qiongqiong, Jarvis, Karen G., Chase, Hannah R., Hébert, Karine, Trach, Larisa H., Lee, Chloe, Sadowski, Jennifer, Lee, Boram, Hwang, Seongeun, Sathyamoorthy, Venugopal, Mullane, Niall, Pava-Ripoll, Monica, Iversen, Carol, Pagotto, Franco, Fanning, Séamus, Tall, Ben D.

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A Genetic Locus of Enterocyte Effacement Conserved Among Diverse Enterobacterial Pathogens von McDaniel, Timothy K., Jarvis, Karen G., Donnenberg, Michael S., Kaper, James B.

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