Pioneer Factor-Nucleosome Binding Events during Differentiation Are Motif Encoded von Meers, Michael P., Janssens, Derek H., Henikoff, Steven

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Multifactorial profiling of epigenetic landscapes at single-cell resolution using MulTI-Tag von Meers, Michael P., Llagas, Geneva, Janssens, Derek H., Codomo, Christine A., Henikoff, Steven

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CUT&Tag2for1: a modified method for simultaneous profiling of the accessible and silenced regulome in single cells von Janssens, Derek H, Otto, Dominik J, Meers, Michael P, Setty, Manu, Ahmad, Kami, Henikoff, Steven

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A modular CRISPR screen identifies individual and combination pathways contributing to HIV-1 latency von Hsieh, Emily, Janssens, Derek H, Paddison, Patrick J, Browne, Edward P, Henikoff, Steve, OhAinle, Molly, Emerman, Michael

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MLL oncoprotein levels influence leukemia lineage identities von Janssens, Derek H., Duran, Melodie, Otto, Dominik J., Wu, Weifang, Xu, Yiling, Kirkey, Danielle, Mullighan, Charles G., Yi, Joanna S., Meshinchi, Soheil, Sarthy, Jay F., Ahmad, Kami, Henikoff, Steven

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Histone deposition pathways determine the chromatin landscapes of H3.1 and H3.3 K27M oncohistones von Sarthy, Jay F, Meers, Michael P, Janssens, Derek H, Henikoff, Jorja G, Feldman, Heather, Paddison, Patrick J, Lockwood, Christina M, Vitanza, Nicholas A, Olson, James M, Ahmad, Kami, Henikoff, Steven

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An Hdac1/Rpd3-Poised Circuit Balances Continual Self-Renewal and Rapid Restriction of Developmental Potential during Asymmetric Stem Cell Division von Janssens, Derek H., Hamm, Danielle C., Anhezini, Lucas, Xiao, Qi, Siller, Karsten H., Siegrist, Sarah E., Harrison, Melissa M., Lee, Cheng-Yu

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Automated in situ chromatin profiling efficiently resolves cell types and gene regulatory programs von Janssens, Derek H, Wu, Steven J, Sarthy, Jay F, Meers, Michael P, Myers, Carrie H, Olson, James M, Ahmad, Kami, Henikoff, Steven

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Earmuff restricts progenitor cell potential by attenuating the competence to respond to self-renewal factors von Janssens, Derek H, Komori, Hideyuki, Grbac, Daniel, Chen, Keng, Koe, Chwee Tat, Wang, Hongyan, Lee, Cheng-Yu

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Efficient low-cost chromatin profiling with CUT&Tag von Kaya-Okur, Hatice S., Janssens, Derek H., Henikoff, Jorja G., Ahmad, Kami, Henikoff, Steven

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Sequential activation of transcriptional repressors promotes progenitor commitment by silencing stem cell identity genes von Rives-Quinto, Noemi, Komori, Hideyuki, Ostgaard, Cyrina M, Janssens, Derek H, Kondo, Shu, Dai, Qi, Moore, Adrian W, Lee, Cheng-Yu

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Global and context-specific transcriptional consequences of oncogenic Fbw7 mutations von Thirimanne, H Nayanga, Wu, Feinan, Janssens, Derek H, Swanger, Jherek, Diab, Ahmed, Feldman, Heather M, Amezquita, Robert A, Gottardo, Raphael, Paddison, Patrick J, Henikoff, Steven, Clurman, Bruce E

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Trithorax maintains the functional heterogeneity of neural stem cells through the transcription factor buttonhead von Komori, Hideyuki, Xiao, Qi, Janssens, Derek H, Dou, Yali, Lee, Cheng-Yu

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Automated CUT&Tag profiling of chromatin heterogeneity in mixed-lineage leukemia von Janssens, Derek H., Meers, Michael P., Wu, Steven J., Babaeva, Ekaterina, Meshinchi, Soheil, Sarthy, Jay F., Ahmad, Kami, Henikoff, Steven

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Epigenomic analysis of formalin-fixed paraffin-embedded samples by CUT&Tag von Henikoff, Steven, Henikoff, Jorja G., Ahmad, Kami, Paranal, Ronald M., Janssens, Derek H., Russell, Zachary R., Szulzewsky, Frank, Kugel, Sita, Holland, Eric C.

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Scalable single-cell profiling of chromatin modifications with sciCUT&Tag von Janssens, Derek H., Greene, Jacob E., Wu, Steven J., Codomo, Christine A., Minot, Samuel S., Furlan, Scott N., Ahmad, Kami, Henikoff, Steven

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Selective androgen receptor modulators activate the canonical prostate cancer androgen receptor program and repress cancer growth von Nyquist, Michael D, Ang, Lisa S, Corella, Alexandra, Coleman, Ilsa M, Meers, Michael P, Christiani, Anthony J, Pierce, Cordell, Janssens, Derek H, Meade, Hannah E, Bose, Arnab, Brady, Lauren, Howard, Timothy, De Sarkar, Navonil, Frank, Sander B, Dumpit, Ruth F, Dalton, James T, Corey, Eva, Plymate, Stephen R, Haffner, Michael C, Mostaghel, Elahe A, Nelson, Peter S

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Nucleosome Patterns in Circulating Tumor DNA Reveal Transcriptional Regulation of Advanced Prostate Cancer Phenotypes von De Sarkar, Navonil, Patton, Robert D, Doebley, Anna-Lisa, Hanratty, Brian, Adil, Mohamed, Kreitzman, Adam J, Sarthy, Jay F, Ko, Minjeong, Brahma, Sandipan, Meers, Michael P, Janssens, Derek H, Ang, Lisa S, Coleman, Ilsa M, Bose, Arnab, Dumpit, Ruth F, Lucas, Jared M, Nunez, Talina A, Nguyen, Holly M, McClure, Heather M, Pritchard, Colin C, Schweizer, Michael T, Morrissey, Colm, Choudhury, Atish D, Baca, Sylvan C, Berchuck, Jacob E, Freedman, Matthew L, Ahmad, Kami, Haffner, Michael C, Montgomery, R Bruce, Corey, Eva, Henikoff, Steven, Nelson, Peter S, Ha, Gavin

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It takes two to tango, a dance between the cells of origin and cancer stem cells in the Drosophila larval brain von Janssens, Derek H., Lee, Cheng-Yu

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Selective androgen receptor modulators activate the canonical prostate cancer androgen receptor program and repress cancer growth von Nyquist, Michael D, Ang, Lisa S, Corella, Alexandra, Coleman, Ilsa M, Meers, Michael P, Christiani, Anthony J, Pierce, Cordell, Janssens, Derek H, Meade, Hannah E, Bose, Arnab, Brady, Lauren, Howard, Timothy, De Sarkar, Navonil, Frank, Sander B, Dumpit, Ruth F, Dalton, James T, Corey, Eva, Plymate, Stephen R, Haffner, Michael C, Mostaghel, Elahe A, Nelson, Peter S

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