Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends von Zrimec, Jan, Kokina, Mariia, Jonasson, Sara, Zorrilla, Francisco, Zelezniak, Aleksej

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Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure von Zrimec, Jan, Börlin, Christoph S., Buric, Filip, Muhammad, Azam Sheikh, Chen, Rhongzen, Siewers, Verena, Verendel, Vilhelm, Nielsen, Jens, Töpel, Mats, Zelezniak, Aleksej

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DNA structure at the plasmid origin-of-transfer indicates its potential transfer range von Zrimec, Jan, Lapanje, Aleš

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Bayesian genome scale modelling identifies thermal determinants of yeast metabolism von Li, Gang, Hu, Yating, Jan Zrimec, Luo, Hao, Wang, Hao, Zelezniak, Aleksej, Ji, Boyang, Nielsen, Jens

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Controlling gene expression with deep generative design of regulatory DNA von Zrimec, Jan, Fu, Xiaozhi, Muhammad, Azam Sheikh, Skrekas, Christos, Jauniskis, Vykintas, Speicher, Nora K., Börlin, Christoph S., Verendel, Vilhelm, Chehreghani, Morteza Haghir, Dubhashi, Devdatt, Siewers, Verena, David, Florian, Nielsen, Jens, Zelezniak, Aleksej

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Evidence-based unification of potato gene models with the UniTato collaborative genome browser von Zagorščak, Maja, Zrimec, Jan, Bleker, Carissa, Nolte, Nadja, Juteršek, Mojca, Ramšak, Živa, Gruden, Kristina, Petek, Marko

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Learning the Regulatory Code of Gene Expression von Zrimec, Jan, Buric, Filip, Kokina, Mariia, Garcia, Victor, Zelezniak, Aleksej

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Enhanced metabolism and negative regulation of ER stress support higher erythropoietin production in HEK293 cells von Saghaleyni, Rasool, Malm, Magdalena, Moruzzi, Noah, Zrimec, Jan, Razavi, Ronia, Wistbacka, Num, Thorell, Hannes, Pintar, Anton, Hober, Andreas, Edfors, Fredrik, Chotteau, Veronique, Berggren, Per-Olof, Grassi, Luigi, Zelezniak, Aleksej, Svensson, Thomas, Hatton, Diane, Nielsen, Jens, Robinson, Jonathan L., Rockberg, Johan

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Multiple plasmid origin‐of‐transfer regions might aid the spread of antimicrobial resistance to human pathogens von Zrimec, Jan

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Natural Microbial Communities Can Be Manipulated by Artificially Constructed Biofilms von Rijavec, Tomaž, Zrimec, Jan, Spanning, Rob, Lapanje, Aleš

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Performance of Regression Models as a Function of Experiment Noise von Li, Gang, Zrimec, Jan, Ji, Boyang, Geng, Jun, Larsbrink, Johan, Zelezniak, Aleksej, Nielsen, Jens, Engqvist, Martin KM

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Toward learning the principles of plant gene regulation von Zrimec, Jan, Zelezniak, Aleksej, Gruden, Kristina

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Data mining of Saccharomyces cerevisiae mutants engineered for increased tolerance towards inhibitors in lignocellulosic hydrolysates von Cámara, Elena, Olsson, Lisbeth, Zrimec, Jan, Zelezniak, Aleksej, Geijer, Cecilia, Nygård, Yvonne

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Bridge-Induced Translocation between NUP145 and TOP2 Yeast Genes Models the Genetic Fusion between the Human Orthologs Associated With Acute Myeloid Leukemia von Tosato, Valentina, West, Nicole, Zrimec, Jan, Nikitin, Dmitri V, Del Sal, Giannino, Marano, Roberto, Breitenbach, Michael, Bruschi, Carlo V

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Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other... von da Cruz Campos, Ana Carolina, Cavallo, Francis M, L Andrade, Nathália, van Dijl, Jan Maarten, Couto, Natacha, Zrimec, Jan, Lo Ten Foe, Jerome R, P Rosa, Ana C, V Damasco, Paulo, Friedrich, Alex W, Chlebowicz-Flissikowska, Monika A, Rossen, John W A

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Fast Prediction of DNA Melting Bubbles Using DNA Thermodynamic Stability von Zrimec, Jan, Lapanje, Ales

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Learning deep representations of enzyme thermal adaptation von Li, Gang, Buric, Filip, Zrimec, Jan, Viknander, Sandra, Nielsen, Jens, Zelezniak, Aleksej, Engqvist, Martin K. M.

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Amino acid sequence encodes protein abundance shaped by protein stability at reduced synthesis cost von Buric, Filip, Viknander, Sandra, Fu, Xiaozhi, Lemke, Oliver, Carmona, Oriol Gracia, Zrimec, Jan, Szyrwiel, Lukasz, Mülleder, Michael, Ralser, Markus, Zelezniak, Aleksej

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Expanding functional protein sequence spaces using generative adversarial networks von Repecka, Donatas, Jauniskis, Vykintas, Karpus, Laurynas, Rembeza, Elzbieta, Rokaitis, Irmantas, Zrimec, Jan, Poviloniene, Simona, Laurynenas, Audrius, Viknander, Sandra, Abuajwa, Wissam, Savolainen, Otto, Meskys, Rolandas, Engqvist, Martin K. M., Zelezniak, Aleksej

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Parallel Factor Analysis Enables Quantification and Identification of Highly Convolved Data-Independent-Acquired Protein Spectra von Buric, Filip, Zrimec, Jan, Zelezniak, Aleksej

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