Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology von Sturm, Gregor, Finotello, Francesca, Petitprez, Florent, Zhang, Jitao David, Baumbach, Jan, Fridman, Wolf H, List, Markus, Aneichyk, Tatsiana

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clusterMaker: a multi-algorithm clustering plugin for Cytoscape von Morris, John H, Apeltsin, Leonard, Newman, Aaron M, Baumbach, Jan, Wittkop, Tobias, Su, Gang, Bader, Gary D, Ferrin, Thomas E

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CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks von Baumbach, Jan

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Federated Machine Learning, Privacy-Enhancing Technologies, and Data Protection Laws in Medical Research: Scoping Review von Brauneck, Alissa, Schmalhorst, Louisa, Kazemi Majdabadi, Mohammad Mahdi, Bakhtiari, Mohammad, Völker, Uwe, Baumbach, Jan, Baumbach, Linda, Buchholtz, Gabriele

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Network analysis methods for studying microbial communities: A mini review von Matchado, Monica Steffi, Lauber, Michael, Reitmeier, Sandra, Kacprowski, Tim, Baumbach, Jan, Haller, Dirk, List, Markus

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Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing von Abellan-Schneyder, Isabel, Matchado, Monica S, Reitmeier, Sandra, Sommer, Alina, Sewald, Zeno, Baumbach, Jan, List, Markus, Neuhaus, Klaus

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Legal aspects of privacy-enhancing technologies in genome-wide association studies and their impact on performance and feasibility von Brauneck, Alissa, Schmalhorst, Louisa, Weiss, Stefan, Baumbach, Linda, Völker, Uwe, Ellinghaus, David, Baumbach, Jan, Buchholtz, Gabriele

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Mass-spectrometry-based draft of the Arabidopsis proteome von Mergner, Julia, Frejno, Martin, List, Markus, Papacek, Michael, Chen, Xia, Chaudhary, Ajeet, Samaras, Patroklos, Richter, Sandra, Shikata, Hiromasa, Messerer, Maxim, Lang, Daniel, Altmann, Stefan, Cyprys, Philipp, Zolg, Daniel P., Mathieson, Toby, Bantscheff, Marcus, Hazarika, Rashmi R., Schmidt, Tobias, Dawid, Corinna, Dunkel, Andreas, Hofmann, Thomas, Sprunck, Stefanie, Falter-Braun, Pascal, Johannes, Frank, Mayer, Klaus F. X., Jürgens, Gerd, Wilhelm, Mathias, Baumbach, Jan, Grill, Erwin, Schneitz, Kay, Schwechheimer, Claus, Kuster, Bernhard

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PanRV: Pangenome-reverse vaccinology approach for identifications of potential vaccine candidates in microbial pangenome von Naz, Kanwal, Naz, Anam, Ashraf, Shifa Tariq, Rizwan, Muhammad, Ahmad, Jamil, Baumbach, Jan, Ali, Amjad

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Author Correction: Legal aspects of privacy-enhancing technologies in genome-wide association studies and their impact on performance and feasibility von Brauneck, Alissa, Schmalhorst, Louisa, Weiss, Stefan, Baumbach, Linda, Völker, Uwe, Ellinghaus, David, Baumbach, Jan, Buchholtz, Gabriele

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Comparative evaluation of feature reduction methods for drug response prediction von Firoozbakht, Farzaneh, Yousefi, Behnam, Tsoy, Olga, Baumbach, Jan, Schwikowski, Benno

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On the performance of pre-microRNA detection algorithms von Saçar Demirci, Müşerref Duygu, Baumbach, Jan, Allmer, Jens

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Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing von Sadegh, Sepideh, Matschinske, Julian, Blumenthal, David B., Galindez, Gihanna, Kacprowski, Tim, List, Markus, Nasirigerdeh, Reza, Oubounyt, Mhaned, Pichlmair, Andreas, Rose, Tim Daniel, Salgado-Albarrán, Marisol, Späth, Julian, Stukalov, Alexey, Wenke, Nina K., Yuan, Kevin, Pauling, Josch K., Baumbach, Jan

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From single drug targets to synergistic network pharmacology in ischemic stroke von Casas, Ana I., Hassan, Ahmed A., Larsen, Simon J., Gomez-Rangel, Vanessa, Elbatreek, Mahmoud, Kleikers, Pamela W. M., Guney, Emre, Egea, Javier, López, Manuela G., Baumbach, Jan, Schmidt, Harald H. H. W.

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Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes von Reitmeier, Sandra, Kiessling, Silke, Clavel, Thomas, List, Markus, Almeida, Eduardo L., Ghosh, Tarini S., Neuhaus, Klaus, Grallert, Harald, Linseisen, Jakob, Skurk, Thomas, Brandl, Beate, Breuninger, Taylor A., Troll, Martina, Rathmann, Wolfgang, Linkohr, Birgit, Hauner, Hans, Laudes, Matthias, Franke, Andre, Le Roy, Caroline I., Bell, Jordana T., Spector, Tim, Baumbach, Jan, O’Toole, Paul W., Peters, Annette, Haller, Dirk

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Network medicine for disease module identification and drug repurposing with the NeDRex platform von Sadegh, Sepideh, Skelton, James, Anastasi, Elisa, Bernett, Judith, Blumenthal, David B., Galindez, Gihanna, Salgado-Albarrán, Marisol, Lazareva, Olga, Flanagan, Keith, Cockell, Simon, Nogales, Cristian, Casas, Ana I., Schmidt, Harald H. H. W., Baumbach, Jan, Wipat, Anil, Kacprowski, Tim

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Success Factors of Artificial Intelligence Implementation in Healthcare von Wolff, Justus, Pauling, Josch, Keck, Andreas, Baumbach, Jan

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AltAnalyze and DomainGraph: analyzing and visualizing exon expression data von Emig, Dorothea, Salomonis, Nathan, Baumbach, Jan, Lengauer, Thomas, Conklin, Bruce R, Albrecht, Mario

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KeyPathwayMineR: De Novo Pathway Enrichment in the R Ecosystem von Mechteridis, Konstantinos, Lauber, Michael, Baumbach, Jan, List, Markus

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Network-based approaches for modeling disease regulation and progression von Galindez, Gihanna, Sadegh, Sepideh, Baumbach, Jan, Kacprowski, Tim, List, Markus

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