Immunology in the Era of Single-Cell Technologies von Efremova, Mirjana, Vento-Tormo, Roser, Park, Jong-Eun, Teichmann, Sarah A, James, Kylie R

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High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells von Beumer, Joep, Puschhof, Jens, Bauzá-Martinez, Julia, Martínez-Silgado, Adriana, Elmentaite, Rasa, James, Kylie R., Ross, Alexander, Hendriks, Delilah, Artegiani, Benedetta, Busslinger, Georg A., Ponsioen, Bas, Andersson-Rolf, Amanda, Saftien, Aurelia, Boot, Charelle, Kretzschmar, Kai, Geurts, Maarten H., Bar-Ephraim, Yotam E., Pleguezuelos-Manzano, Cayetano, Post, Yorick, Begthel, Harry, van der Linden, Franka, Lopez-Iglesias, Carmen, van de Wetering, Willine J., van der Linden, Reinier, Peters, Peter J., Heck, Albert J.R., Goedhart, Joachim, Snippert, Hugo, Zilbauer, Matthias, Teichmann, Sarah A., Wu, Wei, Clevers, Hans

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Immune Cell Dynamics Unfolded by Single-Cell Technologies von Kunz, Daniel J, Gomes, Tomás, James, Kylie R

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Transcriptional diversity along the intestinal crypt–villi axis von James, Kylie R.

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IFNAR1-Signalling Obstructs ICOS-mediated Humoral Immunity during Non-lethal Blood-Stage Plasmodium Infection von Sebina, Ismail, James, Kylie R, Soon, Megan S F, Fogg, Lily G, Best, Shannon E, Labastida Rivera, Fabian de, Montes de Oca, Marcela, Amante, Fiona H, Thomas, Bryce S, Beattie, Lynette, Souza-Fonseca-Guimaraes, Fernando, Smyth, Mark J, Hertzog, Paul J, Hill, Geoffrey R, Hutloff, Andreas, Engwerda, Christian R, Haque, Ashraful

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Plasmodium-specific antibodies block in vivo parasite growth without clearing infected red blood cells von Akter, Jasmin, Khoury, David S, Aogo, Rosemary, Lansink, Lianne I M, SheelaNair, Arya, Thomas, Bryce S, Laohamonthonkul, Pawat, Pernold, Clara P S, Dixon, Matthew W A, Soon, Megan S F, Fogg, Lily G, Engel, Jessica A, Elliott, Trish, Sebina, Ismail, James, Kylie R, Cromer, Deborah, Davenport, Miles P, Haque, Ashraful

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High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells von Beumer, Joep, Puschhof, Jens, Bauzá -Martinez, Julia, Martínez-Silgado, Adriana, Elmentaite, Rasa, James, Kylie R., Ross, Alexander, Hendriks, Delilah, Artegiani, Benedetta, Busslinger, Georg A., Ponsioen, Bas, Andersson-Rolf, Amanda, Saftien, Aurelia, Boot, Charelle, Kretzschmar, Kai, Geurts, Maarten H., Bar-Ephraim, Yotam E., Pleguezuelos-Manzano, Cayetano, Post, Yorick, Begthel, Harry, van der Linden, Franka, Lopez-Iglesias, Carmen, van de Wetering, Willine J., van der Linden, Reinier, Peters, Peter J., Heck, Albert J.R., Goedhart, Joachim, Snippert, Hugo, Zilbauer, Matthias, Teichmann, Sarah A., Wu, Wei, Clevers, Hans

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Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease von Elmentaite, Rasa, Ross, Alexander D.B., Roberts, Kenny, James, Kylie R., Ortmann, Daniel, Gomes, Tomás, Nayak, Komal, Tuck, Liz, Pritchard, Sophie, Bayraktar, Omer Ali, Heuschkel, Robert, Vallier, Ludovic, Teichmann, Sarah A., Zilbauer, Matthias

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Distinct microbial and immune niches of the human colon von James, Kylie R., Gomes, Tomas, Elmentaite, Rasa, Kumar, Nitin, Gulliver, Emily L., King, Hamish W., Stares, Mark D., Bareham, Bethany R., Ferdinand, John R., Petrova, Velislava N., Polański, Krzysztof, Forster, Samuel C., Jarvis, Lorna B., Suchanek, Ondrej, Howlett, Sarah, James, Louisa K., Jones, Joanne L., Meyer, Kerstin B., Clatworthy, Menna R., Saeb-Parsy, Kourosh, Lawley, Trevor D., Teichmann, Sarah A.

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Effect of Mature Blood-Stage Plasmodium Parasite Sequestration on Pathogen Biomass in Mathematical and In Vivo Models of Malaria von Khoury, David S, Cromer, Deborah, Best, Shannon E, James, Kylie R, Kim, Peter S, Engwerda, Christian R, Haque, Ashraful, Davenport, Miles P

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Cells of the human intestinal tract mapped across space and time von Elmentaite, Rasa, Kumasaka, Natsuhiko, Roberts, Kenny, Fleming, Aaron, Dann, Emma, King, Hamish W., Kleshchevnikov, Vitalii, Dabrowska, Monika, Pritchard, Sophie, Bolt, Liam, Vieira, Sara F., Mamanova, Lira, Huang, Ni, Perrone, Francesca, Goh Kai’En, Issac, Lisgo, Steven N., Katan, Matilda, Leonard, Steven, Oliver, Thomas R. W., Hook, C. Elizabeth, Nayak, Komal, Campos, Lia S., Domínguez Conde, Cecilia, Stephenson, Emily, Engelbert, Justin, Botting, Rachel A., Polanski, Krzysztof, van Dongen, Stijn, Patel, Minal, Morgan, Michael D., Marioni, John C., Bayraktar, Omer Ali, Meyer, Kerstin B., He, Xiaoling, Barker, Roger A., Uhlig, Holm H., Mahbubani, Krishnaa T., Saeb-Parsy, Kourosh, Zilbauer, Matthias, Clatworthy, Menna R., Haniffa, Muzlifah, James, Kylie R., Teichmann, Sarah A.

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Malat1 Suppresses Immunity to Infection through Promoting Expression of Maf and IL-10 in Th Cells von Hewitson, James P, West, Katie A, James, Kylie R, Rani, Gulab Fatima, Dey, Nidhi, Romano, Audrey, Brown, Najmeeyah, Teichmann, Sarah A, Kaye, Paul M, Lagos, Dimitris

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An Integrated Taxonomy for Monogenic Inflammatory Bowel Disease von Bolton, Chrissy, Smillie, Christopher S., Pandey, Sumeet, Elmentaite, Rasa, Wei, Gabrielle, Argmann, Carmen, Aschenbrenner, Dominik, James, Kylie R., McGovern, Dermot P.B., Macchi, Marina, Cho, Judy, Shouval, Dror S., Kammermeier, Jochen, Koletzko, Sibylle, Bagalopal, Krithika, Capitani, Melania, Cavounidis, Athena, Pires, Elisabete, Weidinger, Carl, McCullagh, James, Arkwright, Peter D., Haller, Wolfram, Siegmund, Britta, Peters, Lauren, Jostins, Luke, Travis, Simon P.L., Anderson, Carl A., Snapper, Scott, Klein, Christoph, Schadt, Eric, Zilbauer, Matthias, Xavier, Ramnik, Teichmann, Sarah, Muise, Aleixo M., Regev, Aviv, Uhlig, Holm H.

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Spatial and molecular profiling of the mononuclear phagocyte network in classic Hodgkin lymphoma von Stewart, Benjamin J., Fergie, Martin, Young, Matthew D., Jones, Claire, Sachdeva, Ashwin, Blain, Alex, Bacon, Chris M., Rand, Vikki, Ferdinand, John R., James, Kylie R., Mahbubani, Krishnaa T., Hook, Liz, Jonas, Nicolaas, Coleman, Nicholas, Saeb-Parsy, Kourosh, Collin, Matthew, Clatworthy, Menna R., Behjati, Sam, Carey, Christopher D.

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Role reversals: non-canonical roles for immune and non-immune cells in the gut von Tearle, Jacqueline L.E., Tang, Adelynn, Vasanthakumar, Ajithkumar, James, Kylie R.

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Germs and germlines: how “public” B‐cell clones evolve in the gut von James, Kylie R, King, Hamish W

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Transcriptome dynamics of CD4+ T cells during malaria maps gradual transit from effector to memory von Soon, Megan S. F., Lee, Hyun Jae, Engel, Jessica A., Straube, Jasmin, Thomas, Bryce S., Pernold, Clara P. S., Clarke, Lachlan S., Laohamonthonkul, Pawat, Haldar, Rohit N., Williams, Cameron G., Lansink, Lianne I. M., Moreira, Marcela L., Bramhall, Michael, Koufariotis, Lambros T., Wood, Scott, Chen, Xi, James, Kylie R., Lönnberg, Tapio, Lane, Steven W., Belz, Gabrielle T., Engwerda, Christian R., Khoury, David S., Davenport, Miles P., Svensson, Valentine, Teichmann, Sarah A., Haque, Ashraful

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A Roadmap for the Human Gut Cell Atlas von Zilbauer, Matthias, James, Kylie R., Kaur, Mandeep, Pott, Sebastian, Li, Zhixin, Burger, Albert, Thiagarajah, Jay R., Burclaff, Joseph, Jahnsen, Frode L., Perrone, Francesca, Ross, Alexander D., Matteoli, Gianluca, Stakenborg, Nathalie, Sujino, Tomohisa, Moor, Andreas, Bartolome-Casado, Raquel, Bækkevold, Espen S., Zhou, Ran, Xie, Bingqing, Lau, Ken S., Din, Shahida, Magness, Scott T., Yao, Qiuming, Beyaz, Semir, Arends, Mark, Denadai-Souza, Alexandre, Coburn, Lori A., Gaublomme, Jellert T., Baldock, Richard, Papatheodorou, Irene, Ordovas-Montanes, Jose, Boeckxstaens, Guy, Hupalowska, Anna, Teichmann, Sarah A., Regev, Aviv, Xavier, Ramnik J., Simmons, Alison, Snyder, Michael P., Wilson, Keith T.

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Single-cell integration reveals metaplasia in inflammatory gut diseases von Oliver, Amanda J., Huang, Ni, Bartolome-Casado, Raquel, Li, Ruoyan, Koplev, Simon, Nilsen, Hogne R., Moy, Madelyn, Cakir, Batuhan, Polanski, Krzysztof, Gudiño, Victoria, Melón-Ardanaz, Elisa, Sumanaweera, Dinithi, Dimitrov, Daniel, Milchsack, Lisa Marie, FitzPatrick, Michael E. B., Provine, Nicholas M., Boccacino, Jacqueline M., Dann, Emma, Predeus, Alexander V., To, Ken, Prete, Martin, Chapman, Jonathan A., Masi, Andrea C., Stephenson, Emily, Engelbert, Justin, Lobentanzer, Sebastian, Perera, Shani, Richardson, Laura, Kapuge, Rakeshlal, Wilbrey-Clark, Anna, Semprich, Claudia I., Ellams, Sophie, Tudor, Catherine, Joseph, Philomeena, Garrido-Trigo, Alba, Corraliza, Ana M., Oliver, Thomas R. W., Hook, C. Elizabeth, James, Kylie R., Mahbubani, Krishnaa T., Saeb-Parsy, Kourosh, Zilbauer, Matthias, Saez-Rodriguez, Julio, Høivik, Marte Lie, Bækkevold, Espen S., Stewart, Christopher J., Berrington, Janet E., Meyer, Kerstin B., Klenerman, Paul, Salas, Azucena, Haniffa, Muzlifah, Jahnsen, Frode L., Elmentaite, Rasa, Teichmann, Sarah A.

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Type I IFN signaling in CD8- DCs impairs Th1-dependent malaria immunity von Haque, Ashraful, Best, Shannon E, Montes de Oca, Marcela, James, Kylie R, Ammerdorffer, Anne, Edwards, Chelsea L, de Labastida Rivera, Fabian, Amante, Fiona H, Bunn, Patrick T, Sheel, Meru, Sebina, Ismail, Koyama, Motoko, Varelias, Antiopi, Hertzog, Paul J, Kalinke, Ulrich, Gun, Sin Yee, Rénia, Laurent, Ruedl, Christiane, MacDonald, Kelli P A, Hill, Geoffrey R, Engwerda, Christian R

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