Optimization of parameters for semiempirical methods VI: more modifications to the NDDO approximations and re-optimization of parameters von Stewart, James J. P.

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Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation von Hall, James P J, Wright, Rosanna C T, Harrison, Ellie, Muddiman, Katie J, Wood, A Jamie, Paterson, Steve, Brockhurst, Michael A

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Sampling the mobile gene pool: innovation via horizontal gene transfer in bacteria von Hall, James P. J., Brockhurst, Michael A., Harrison, Ellie

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A megaplasmid family driving dissemination of multidrug resistance in Pseudomonas von Cazares, Adrian, Moore, Matthew P., Hall, James P.  J., Wright, Laura L., Grimes, Macauley, Emond-Rhéault, Jean-Guillaume, Pongchaikul, Pisut, Santanirand, Pitak, Levesque, Roger C., Fothergill, Joanne L., Winstanley, Craig

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Optimization of parameters for semiempirical methods V: modification of NDDO approximations and application to 70 elements von Stewart, James J P

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Is the bacterial chromosome a mobile genetic element? von Hall, James P. J.

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tsscds2018: A code for automated discovery of chemical reaction mechanisms and solving the kinetics von Rodríguez, Aurelio, Rodríguez-Fernández, Roberto, A Vázquez, Saulo, L Barnes, George, J P Stewart, James, Martínez-Núñez, Emilio

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Source–sink plasmid transfer dynamics maintain gene mobility in soil bacterial communities von Hall, James P. J., Wood, A. Jamie, Harrison, Ellie, Brockhurst, Michael A.

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Application of the PM6 method to modeling proteins von Stewart, James J. P.

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Identification of Low- and High-Impact Hemagglutinin Amino Acid Substitutions That Drive Antigenic Drift of Influenza A(H1N1) Viruses von Harvey, William T, Benton, Donald J, Gregory, Victoria, Hall, James P J, Daniels, Rodney S, Bedford, Trevor, Haydon, Daniel T, Hay, Alan J, McCauley, John W, Reeve, Richard

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MAGqual: a stand-alone pipeline to assess the quality of metagenome-assembled genomes von Cansdale, Annabel, Chong, James P J

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Mosaic VSGs and the scale of Trypanosoma brucei antigenic variation von Hall, James P J, Wang, Huanhuan, Barry, J David

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Gene mobility promotes the spread of resistance in bacterial populations von Stevenson, Cagla, Hall, James PJ, Harrison, Ellie, Wood, AJamie, Brockhurst, Michael A

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The proficiency of the original host species determines community-level plasmid dynamics von Kottara, Anastasia, Hall, James P J, Brockhurst, Michael A

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Exploiting lung adaptation and phage steering to clear pan-resistant Pseudomonas aeruginosa infections in vivo von Ashworth, Eleri A., Wright, Rosanna C. T., Shears, Rebecca K., Wong, Janet K. L., Hassan, Akram, Hall, James P. J., Kadioglu, Aras, Fothergill, Joanne L.

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Horizontal gene transfer and ecological interactions jointly control microbiome stability von Coyte, Katharine Z, Stevenson, Cagla, Knight, Christopher G, Harrison, Ellie, Hall, James P J, Brockhurst, Michael A

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Changes in prevalence and load of airway bacteria using quantitative PCR in stable and exacerbated COPD von Garcha, Davinder S, Thurston, Sarah J, Patel, Anant R C, Mackay, Alexander J, Goldring, James J P, Donaldson, Gavin C, McHugh, Timothy D, Wedzicha, Jadwiga A

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Temporal Clustering of Exacerbations in Chronic Obstructive Pulmonary Disease von Hurst, John R, Donaldson, Gavin C, Quint, Jennifer K, Goldring, James J. P, Baghai-Ravary, Ramin, Wedzicha, Jadwiga A

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Plasmids manipulate bacterial behaviour through translational regulatory crosstalk von Thompson, Catriona M A, Hall, James P J, Chandra, Govind, Martins, Carlo, Saalbach, Gerhard, Panturat, Supakan, Bird, Susannah M, Ford, Samuel, Little, Richard H, Piazza, Ainelen, Harrison, Ellie, Jackson, Robert W, Brockhurst, Michael A, Malone, Jacob G

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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata von Camargo, Antonio Pedro, Call, Lee, Roux, Simon, Nayfach, Stephen, Huntemann, Marcel, Palaniappan, Krishnaveni, Ratner, Anna, Chu, Ken, Mukherjeep, Supratim, Reddy, T B K, Chen, I-Min A, Ivanova, Natalia N, Eloe-Fadrosh, Emiley A, Woyke, Tanja, Baltrus, David A, Castañeda-Barba, Salvador, de la Cruz, Fernando, Funnell, Barbara E, Hall, James P J, Mukhopadhyay, Aindrila, Rocha, Eduardo P C, Stalder, Thibault, Top, Eva, Kyrpides, Nikos C

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