histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data von Schapiro, Denis, Jackson, Hartland W, Raghuraman, Swetha, Fischer, Jana R, Zanotelli, Vito R T, Schulz, Daniel, Giesen, Charlotte, Catena, Raúl, Varga, Zsuzsanna, Bodenmiller, Bernd

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The single-cell pathology landscape of breast cancer von Jackson, Hartland W., Fischer, Jana R., Zanotelli, Vito R. T., Ali, H. Raza, Mechera, Robert, Soysal, Savas D., Moch, Holger, Muenst, Simone, Varga, Zsuzsanna, Weber, Walter P., Bodenmiller, Bernd

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Loss of the Timp gene family is sufficient for the acquisition of the CAF-like cell state von Shimoda, Masayuki, Principe, Simona, Jackson, Hartland W., Luga, Valbona, Fang, Hui, Molyneux, Sam D., Shao, Yang W., Aiken, Alison, Waterhouse, Paul D., Karamboulas, Christina, Hess, Franz M., Ohtsuka, Takashi, Okada, Yasunori, Ailles, Laurie, Ludwig, Andreas, Wrana, Jeffrey L., Kislinger, Thomas, Khokha, Rama

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Segmentation aware probabilistic phenotyping of single-cell spatial protein expression data von Lee, Yuju, Chen, Edward L. Y., Chan, Darren C. H., Dinesh, Anuroopa, Afiuni-Zadeh, Somaieh, Klamann, Conor, Selega, Alina, Mrkonjic, Miralem, Jackson, Hartland W., Campbell, Kieran R.

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In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer von Dervovic, Dzana, Malik, Ahmad A., Chen, Edward L. Y., Narimatsu, Masahiro, Adler, Nina, Afiuni-Zadeh, Somaieh, Krenbek, Dagmar, Martinez, Sebastien, Tsai, Ricky, Boucher, Jonathan, Berman, Jacob M., Teng, Katie, Ayyaz, Arshad, Lü, YiQing, Mbamalu, Geraldine, Loganathan, Sampath K., Lee, Jongbok, Zhang, Li, Guidos, Cynthia, Wrana, Jeffrey, Valipour, Arschang, Roux, Philippe P., Reimand, Jüri, Jackson, Hartland W., Schramek, Daniel

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TIMPs: versatile extracellular regulators in cancer von Jackson, Hartland W., Defamie, Virginie, Waterhouse, Paul, Khokha, Rama

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Author Correction: In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer von Dervovic, Dzana, Malik, Ahmad A., Chen, Edward L. Y., Narimatsu, Masahiro, Adler, Nina, Afiuni-Zadeh, Somaieh, Krenbek, Dagmar, Martinez, Sebastien, Tsai, Ricky, Boucher, Jonathan, Berman, Jacob M., Teng, Katie, Ayyaz, Arshad, Lü, YiQing, Mbamalu, Geraldine, Loganathan, Sampath K., Lee, Jongbok, Zhang, Li, Guidos, Cynthia, Wrana, Jeffrey, Valipour, Arschang, Roux, Philippe P., Reimand, Jüri, Jackson, Hartland W., Schramek, Daniel

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RANK Signaling Amplifies WNT-Responsive Mammary Progenitors through R-SPONDIN1 von Joshi, Purna A., Waterhouse, Paul D., Kannan, Nagarajan, Narala, Swami, Fang, Hui, Di Grappa, Marco A., Jackson, Hartland W., Penninger, Josef M., Eaves, Connie, Khokha, Rama

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Timp3 deficient mice show resistance to developing breast cancer von Jackson, Hartland W, Hojilla, Carlo V, Weiss, Ashley, Sanchez, Otto H, Wood, Geoffrey A, Khokha, Rama

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TIMP3 regulates mammary epithelial apoptosis with immune cell recruitment through differential TNF dependence von Hojilla, Carlo V, Jackson, Hartland W, Khokha, Rama

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A Progesterone-CXCR4 Axis Controls Mammary Progenitor Cell Fate in the Adult Gland von Shiah, Yu-Jia, Tharmapalan, Pirashaanthy, Casey, Alison E., Joshi, Purna A., McKee, Trevor D., Jackson, Hartland W., Beristain, Alexander G., Chan-Seng-Yue, Michelle A., Bader, Gary D., Lydon, John P., Waterhouse, Paul D., Boutros, Paul C., Khokha, Rama

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Progesterone induces adult mammary stem cell expansion von Joshi, Purna A., Jackson, Hartland W., Beristain, Alexander G., Di Grappa, Marco A., Mote, Patricia A., Clarke, Christine L., Stingl, John, Waterhouse, Paul D., Khokha, Rama

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Testing a Nanoparticle Reagent for Imaging Mass Cytometry von Abtahi, Mahtab, Gheiratmand, Ladan, Dinesh, Anuroopa, Liu, Yang, Wong, Edmond C. N., Cho, Hyungjun, Majonis, Daniel, Jackson, Hartland W., Mrkonjic, Miralem, Winnik, Mitchell A.

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Automated assignment of cell identity from single-cell multiplexed imaging and proteomic data von Geuenich, Michael J., Hou, Jinyu, Lee, Sunyun, Ayub, Shanza, Jackson, Hartland W., Campbell, Kieran R.

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Design Parameters for a Mass Cytometry Detectable HaloTag Ligand von Potter, Nicole, Latour, Simon, Wong, Edmond C. N., Winnik, Mitchell A., Jackson, Hartland W., McGuigan, Alison P., Nitz, Mark

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Single-cell atlas of the human brain vasculature across development, adulthood and disease von Wälchli, Thomas, Ghobrial, Moheb, Schwab, Marc, Takada, Shigeki, Zhong, Hang, Suntharalingham, Samuel, Vetiska, Sandra, Gonzalez, Daymé Rodrigues, Wu, Ruilin, Rehrauer, Hubert, Dinesh, Anuroopa, Yu, Kai, Chen, Edward L. Y., Bisschop, Jeroen, Farnhammer, Fiona, Mansur, Ann, Kalucka, Joanna, Tirosh, Itay, Regli, Luca, Schaller, Karl, Frei, Karl, Ketela, Troy, Bernstein, Mark, Kongkham, Paul, Carmeliet, Peter, Valiante, Taufik, Dirks, Peter B., Suva, Mario L., Zadeh, Gelareh, Tabar, Viviane, Schlapbach, Ralph, Jackson, Hartland W., De Bock, Katrien, Fish, Jason E., Monnier, Philippe P., Bader, Gary D., Radovanovic, Ivan

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Signal amplification by cyclic extension enables high-sensitivity single-cell mass cytometry von Lun, Xiao-Kang, Sheng, Kuanwei, Yu, Xueyang, Lam, Ching Yeung, Gowri, Gokul, Serrata, Matthew, Zhai, Yunhao, Su, Hanquan, Luan, Jingyi, Kim, Youngeun, Ingber, Donald E, Jackson, Hartland W, Yaffe, Michael B, Yin, Peng

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Expansion of stem cells counteracts age-related mammary regression in compound Timp1/Timp3 null mice von Jackson, Hartland W., Waterhouse, Paul, Sinha, Ankit, Kislinger, Thomas, Berman, Hal K., Khokha, Rama

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Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer von Ali, H Raza, Jackson, Hartland W, Zanotelli, Vito R T, Danenberg, Esther, Fischer, Jana R, Bardwell, Helen, Provenzano, Elena, Rueda, Oscar M, Chin, Suet-Feung, Aparicio, Samuel, Caldas, Carlos, Bodenmiller, Bernd

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Ubiquitin ligase RNF8 suppresses Notch signaling to regulate mammary development and tumorigenesis von Li, Li, Guturi, Kiran Kumar Naidu, Gautreau, Brandon, Patel, Parasvi S, Saad, Amine, Morii, Mayako, Mateo, Francesca, Palomero, Luis, Barbour, Haithem, Gomez, Antonio, Ng, Deborah, Kotlyar, Max, Pastrello, Chiara, Jackson, Hartland W, Khokha, Rama, Jurisica, Igor, Affar, El Bachir, Raught, Brian, Sanchez, Otto, Alaoui-Jamali, Moulay, Pujana, Miguel A, Hakem, Anne, Hakem, Razq

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