Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection von Charalampous, Themoula, Kay, Gemma L., Richardson, Hollian, Aydin, Alp, Baldan, Rossella, Jeanes, Christopher, Rae, Duncan, Grundy, Sara, Turner, Daniel J., Wain, John, Leggett, Richard M., Livermore, David M., O’Grady, Justin

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Co-infections: potentially lethal and unexplored in COVID-19 von Cox, Michael J, Loman, Nicholas, Bogaert, Debby, O'Grady, Justin

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MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island von Ashton, Philip M, Nair, Satheesh, Dallman, Tim, Rubino, Salvatore, Rabsch, Wolfgang, Mwaigwisya, Solomon, Wain, John, O'Grady, Justin

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A powerful, non-invasive test to rule out infection von O’Grady, Justin

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Diagnosing tuberculosis in the 21st century – Dawn of a genomics revolution? von Jeanes, Christopher, O’Grady, Justin

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Assessment of the Xpert MTB/RIF assay for diagnosis of tuberculosis with gastric lavage aspirates in children in sub-Saharan Africa: a prospective descriptive study von Bates, Matthew, PhD, O'Grady, Justin, PhD, Maeurer, Markus, Prof, Tembo, John, MSc, Chilukutu, Lophina, BSc, Chabala, Chishala, MMed, Kasonde, Richard, BSc, Mulota, Peter, BSc, Mzyece, Judith, BSc, Chomba, Mumba, BSc, Mukonda, Lukundo, BSc, Mumba, Maxwell, BSc, Kapata, Nathan, MBChB, Rachow, Andrea, MD, Clowes, Petra, MD, Hoelscher, Michael, Prof, Mwaba, Peter, FRCP, Zumla, Alimuddin, Prof

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Tuberculosis trends in Saudis and non-Saudis in the Kingdom of Saudi Arabia--a 10 year retrospective study (2000-2009) von Abouzeid, Mohammad S, Zumla, Alimuddin I, Felemban, Shaza, Alotaibi, Badriah, O'Grady, Justin, Memish, Ziad A

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Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopedic Device Infection von Street, Teresa L, Sanderson, Nicholas D, Kolenda, Camille, Kavanagh, James, Pickford, Hayleah, Hoosdally, Sarah, Cregan, Jack, Taunt, Carol, Jones, Emma, Oakley, Sarah, Atkins, Bridget L, Dudareva, Maria, McNally, Martin A, O'Grady, Justin, Crook, Derrick W, Eyre, David W

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Rapid and accurate detection of Mycobacterium tuberculosis in sputum samples by Cepheid Xpert MTB/RIF assay--a clinical validation study von Rachow, Andrea, Zumla, Alimuddin, Heinrich, Norbert, Rojas-Ponce, Gabriel, Mtafya, Bariki, Reither, Klaus, Ntinginya, Elias N, O'Grady, Justin, Huggett, Jim, Dheda, Keertan, Boehme, Catharina, Perkins, Mark, Saathoff, Elmar, Hoelscher, Michael

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Optimizing DNA Extraction Methods for Nanopore Sequencing of Neisseria gonorrhoeae Directly from Urine Samples von Street, Teresa L, Barker, Leanne, Sanderson, Nicholas D, Kavanagh, James, Hoosdally, Sarah, Cole, Kevin, Newnham, Robert, Selvaratnam, Mathyruban, Andersson, Monique, Llewelyn, Martin J, O'Grady, Justin, Crook, Derrick W, Eyre, David W

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The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs von Phelan, Jody, O'Sullivan, Denise M, Machado, Diana, Ramos, Jorge, Whale, Alexandra S, O'Grady, Justin, Dheda, Keertan, Campino, Susana, McNerney, Ruth, Viveiros, Miguel, Huggett, Jim F, Clark, Taane G

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An optimised protocol for detection of SARS-CoV-2 in stool von Li, Tianqi, Garcia-Gutierrez, Enriqueta, Yara, Daniel A, Scadden, Jacob, Davies, Jade, Hutchins, Chloe, Aydin, Alp, O'Grady, Justin, Narbad, Arjan, Romano, Stefano, Sayavedra, Lizbeth

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Rapid and Point-of-Care Testing in Respiratory Tract Infections: An Antibiotic Guardian? von Dhesi, Zaneeta, Enne, Virve I, O'Grady, Justin, Gant, Vanya, Livermore, David M

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MinION Analysis and Reference Consortium: Phase 1 data release and analysis von Ip, Camilla L C, Loose, Matthew, Tyson, John R, de Cesare, Mariateresa, Brown, Bonnie L, Jain, Miten, Leggett, Richard M, Eccles, David A, Zalunin, Vadim, Urban, John M, Piazza, Paolo, Bowden, Rory J, Paten, Benedict, Mwaigwisya, Solomon, Batty, Elizabeth M, Simpson, Jared T, Snutch, Terrance P, Birney, Ewan, Buck, David, Goodwin, Sara, Jansen, Hans J, O'Grady, Justin, Olsen, Hugh E

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Recent and emerging technologies for the rapid diagnosis of infection and antimicrobial resistance von Trotter, Alexander J., Aydin, Alp, Strinden, Michael J., O’Grady, Justin

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Genomic diversity of Escherichia coli from healthy children in rural Gambia von Foster-Nyarko, Ebenezer, Alikhan, Nabil-Fareed, Ikumapayi, Usman N, Sarwar, Golam, Okoi, Catherine, Tientcheu, Peggy-Estelle Maguiagueu, Defernez, Marianne, O'Grady, Justin, Antonio, Martin, Pallen, Mark J

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MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry [version 1; peer review: 1 approved, 2 approved with reservations] von Jain, Miten, Tyson, John R, Loose, Matthew, Ip, Camilla L.C, Eccles, David A, O'Grady, Justin, Malla, Sunir, Leggett, Richard M, Wallerman, Ola, Jansen, Hans J, Zalunin, Vadim, Birney, Ewan, Brown, Bonnie L, Snutch, Terrance P, Olsen, Hugh E

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Review of multidrug-resistant and extensively drug-resistant TB: global perspectives with a focus on sub-Saharan Africa von Migliori, Giovanni Battista, Dheda, Keertan, Centis, Rosella, Mwaba, Peter, Bates, Matthew, O'Grady, Justin, Hoelscher, Michael, Zumla, Alimuddin

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Genomic epidemiology and the role of international and regional travel in the SARS-CoV-2 epidemic in Zimbabwe: a retrospective study of routinely collected surveillance data von Mashe, Tapfumanei, Takawira, Faustinos Tatenda, de Oliveira Martins, Leonardo, Gudza-Mugabe, Muchaneta, Chirenda, Joconiah, Munyanyi, Manes, Chaibva, Blessmore V, Tarupiwa, Andrew, Gumbo, Hlanai, Juru, Agnes, Nyagupe, Charles, Ruhanya, Vurayai, Phiri, Isaac, Manangazira, Portia, Goredema, Alexander, Danda, Sydney, Chabata, Israel, Jonga, Janet, Munharira, Rutendo, Masunda, Kudzai, Mukeredzi, Innocent, Mangwanya, Douglas, Trotter, Alex, Le Viet, Thanh, Rudder, Steven, Kay, Gemma, Baker, David, Thilliez, Gaetan, Gutierrez, Ana Victoria, O'Grady, Justin, Hove, Maxwell, Mutapuri-Zinyowera, Sekesai, Page, Andrew J, Kingsley, Robert A, Mhlanga, Gibson

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A novel multiplex real-time PCR for the identification of mycobacteria associated with zoonotic tuberculosis von Reddington, Kate, O'Grady, Justin, Dorai-Raj, Siobhan, Niemann, Stefan, van Soolingen, Dick, Barry, Thomas

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