Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis von Wieder, Cecilia, Frainay, Clément, Poupin, Nathalie, Rodríguez-Mier, Pablo, Vinson, Florence, Cooke, Juliette, Lai, Rachel Pj, Bundy, Jacob G, Jourdan, Fabien, Ebbels, Timothy

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A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques von Fresnais, Louison, Perin, Olivier, Riu, Anne, Grall, Romain, Ott, Alban, Fromenty, Bernard, Gallardo, Jean-Clément, Stingl, Maximilian, Frainay, Clément, Jourdan, Fabien, Poupin, Nathalie

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PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration von Wieder, Cecilia, Cooke, Juliette, Frainay, Clement, Poupin, Nathalie, Bowler, Russell, Jourdan, Fabien, Kechris, Katerina J, Lai, Rachel Pj, Ebbels, Timothy

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Osteogenic Response of Human Mesenchymal Stem Cells Analysed Using Combined Intracellular and Extracellular Metabolomic Monitoring von Surrati, Amal, Evseev, Sergey, Jourdan, Fabien, Kim, Dong-Hyun, Sottile, Virginie

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DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks von Rodríguez-Mier, Pablo, Poupin, Nathalie, de Blasio, Carlo, Le Cam, Laurent, Jourdan, Fabien

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Genome scale metabolic network modelling for metabolic profile predictions von Cooke, Juliette, Delmas, Maxime, Wieder, Cecilia, Rodríguez Mier, Pablo, Frainay, Clément, Vinson, Florence, Ebbels, Timothy, Poupin, Nathalie, Jourdan, Fabien

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Gestational exposure to bisphenol A induces region-specific changes in brain metabolomic fingerprints in sheep von Guignard, Davy, Canlet, Cécile, Tremblay-Franco, Marie, Chaillou, Elodie, Gautier, Roselyne, Gayrard, Véronique, Picard-Hagen, Nicole, Schroeder, Henri, Jourdan, Fabien, Zalko, Daniel, Viguié, Catherine, Cabaton, Nicolas J.

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The GOLIATH Project: Towards an Internationally Harmonised Approach for Testing Metabolism Disrupting Compounds von Legler, Juliette, Zalko, Daniel, Jourdan, Fabien, Jacobs, Miriam, Fromenty, Bernard, Balaguer, Patrick, Bourguet, William, Munic Kos, Vesna, Nadal, Angel, Beausoleil, Claire, Cristobal, Susana, Remy, Sylvie, Ermler, Sibylle, Margiotta-Casaluci, Luigi, Griffin, Julian L, Blumberg, Bruce, Chesné, Christophe, Hoffmann, Sebastian, Andersson, Patrik L, Kamstra, Jorke H

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Networks and Graphs Discovery in Metabolomics Data Analysis and Interpretation von Amara, Adam, Frainay, Clément, Jourdan, Fabien, Naake, Thomas, Neumann, Steffen, Novoa-Del-Toro, Elva María, Salek, Reza M, Salzer, Liesa, Scharfenberg, Sarah, Witting, Michael

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Dynamic Metabolic Disruption in Rats Perinatally Exposed to Low Doses of Bisphenol-A von Tremblay-Franco, Marie, Cabaton, Nicolas J, Canlet, Cécile, Gautier, Roselyne, Schaeberle, Cheryl M, Jourdan, Fabien, Sonnenschein, Carlos, Vinson, Florence, Soto, Ana M, Zalko, Daniel

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Can we trust untargeted metabolomics? Results of the metabo-ring initiative, a large-scale, multi-instrument inter-laboratory study von Martin, Jean-Charles, Maillot, Matthieu, Mazerolles, Gérard, Verdu, Alexandre, Lyan, Bernard, Migné, Carole, Defoort, Catherine, Canlet, Cecile, Junot, Christophe, Guillou, Claude, Manach, Claudine, Jabob, Daniel, Bouveresse, Delphine Jouan-Rimbaud, Paris, Estelle, Pujos-Guillot, Estelle, Jourdan, Fabien, Giacomoni, Franck, Courant, Frédérique, Favé, Gaëlle, Le Gall, Gwenaëlle, Chassaigne, Hubert, Tabet, Jean-Claude, Martin, Jean-Francois, Antignac, Jean-Philippe, Shintu, Laetitia, Defernez, Marianne, Philo, Mark, Alexandre-Gouaubau, Marie-Cécile, Amiot-Carlin, Marie-Josephe, Bossis, Mathilde, Triba, Mohamed N., Stojilkovic, Natali, Banzet, Nathalie, Molinié, Roland, Bott, Romain, Goulitquer, Sophie, Caldarelli, Stefano, Rutledge, Douglas N.

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Improving lipid mapping in Genome Scale Metabolic Networks using ontologies von Poupin, Nathalie, Vinson, Florence, Moreau, Arthur, Batut, Aurélie, Chazalviel, Maxime, Colsch, Benoit, Fouillen, Laetitia, Guez, Sarah, Khoury, Spiro, Dalloux-Chioccioli, Jessica, Tournadre, Anthony, Le Faouder, Pauline, Pouyet, Corinne, Van Delft, Pierre, Viars, Fanny, Bertrand-Michel, Justine, Jourdan, Fabien

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Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas von Frainay, Clément, Schymanski, Emma L, Neumann, Steffen, Merlet, Benjamin, Salek, Reza M, Jourdan, Fabien, Yanes, Oscar

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Postprandial NMR-Based Metabolic Exchanges Reflect Impaired Phenotypic Flexibility across Splanchnic Organs in the Obese Yucatan Mini-Pig von Tremblay-Franco, Marie, Poupin, Nathalie, Amiel, Aurélien, Canlet, Cécile, Rémond, Didier, Debrauwer, Laurent, Dardevet, Dominique, Jourdan, Fabien, Savary-Auzeloux, Isabelle, Polakof, Sergio

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An Untargeted Metabolomics Approach to Investigate the Metabolic Modulations of HepG2 Cells Exposed to Low Doses of Bisphenol A and 17β-Estradiol von Cabaton, Nicolas J, Poupin, Nathalie, Canlet, Cécile, Tremblay-Franco, Marie, Audebert, Marc, Cravedi, Jean-Pierre, Riu, Anne, Jourdan, Fabien, Zalko, Daniel

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Multiplatform metabolomics for an integrative exploration of metabolic syndrome in older men von Comte, Blandine, Monnerie, Stéphanie, Brandolini-Bunlon, Marion, Canlet, Cécile, Castelli, Florence, Chu-Van, Emeline, Colsch, Benoit, Fenaille, François, Joly, Charlotte, Jourdan, Fabien, Lenuzza, Natacha, Lyan, Bernard, Martin, Jean-François, Migné, Carole, Morais, José A., Pétéra, Mélanie, Poupin, Nathalie, Vinson, Florence, Thevenot, Etienne, Junot, Christophe, Gaudreau, Pierrette, Pujos-Guillot, Estelle

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Gaining Insights Into Metabolic Networks Using Chemometrics and Bioinformatics: Chronic Kidney Disease as a Clinical Model von Boccard, Julien, Schvartz, Domitille, Codesido, Santiago, Hanafi, Mohamed, Gagnebin, Yoric, Ponte, Belén, Jourdan, Fabien, Rudaz, Serge

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MetaNetter: inference and visualization of high-resolution metabolomic networks von Jourdan, Fabien, Breitling, Rainer, Barrett, Michael P., Gilbert, David

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Intuitive visualization and analysis of multi-omics data and application to Escherichia coli carbon metabolism von Enjalbert, Brice, Jourdan, Fabien, Portais, Jean-Charles

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Communities and hierarchical structures in dynamic social networks: analysis and visualization von Gilbert, Frédéric, Simonetto, Paolo, Zaidi, Faraz, Jourdan, Fabien, Bourqui, Romain

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