So many genes, so little time: A practical approach to divergence-time estimation in the genomic era von Smith, Stephen A, Brown, Joseph W, Walker, Joseph F

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Constructing a broadly inclusive seed plant phylogeny von Smith, Stephen A., Brown, Joseph W.

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Plant community re-organization and increased productivity due to multi-year nutrient enrichment of a coastal grassland von Brown, Joseph K, Moulton, Ashley, Zinnert, Julie C

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Phyx: phylogenetic tools for unix von Brown, Joseph W, Walker, Joseph F, Smith, Stephen A

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A molecular genetic timescale for the diversification of autotrophic stramenopiles (Ochrophyta): substantive underestimation of putative fossil ages von Brown, Joseph W, Sorhannus, Ulf

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Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life von Pease, James B., Brown, Joseph W., Walker, Joseph F., Hinchliff, Cody E., Smith, Stephen A.

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The Past Sure is Tense: On Interpreting Phylogenetic Divergence Time Estimates von Brown, Joseph W., Smith, Stephen A.

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Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants von Smith, Stephen A, Moore, Michael J, Brown, Joseph W, Yang, Ya

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Correlates of Warning: Territory, Democracy, and Casualty Aversion in Terrorist Tactics von Brown, Joseph M.

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An environmentally benign antimicrobial nanoparticle based on a silver-infused lignin core von Richter, Alexander P., Brown, Joseph S., Bharti, Bhuvnesh, Wang, Amy, Gangwal, Sumit, Houck, Keith, Cohen Hubal, Elaine A., Paunov, Vesselin N., Stoyanov, Simeon D., Velev, Orlin D.

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geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees von Pennell, Matthew W, Eastman, Jonathan M, Slater, Graham J, Brown, Joseph W, Uyeda, Josef C, FitzJohn, Richard G, Alfaro, Michael E, Harmon, Luke J

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ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data von Kieser, Silas, Brown, Joseph, Zdobnov, Evgeny M, Trajkovski, Mirko, McCue, Lee Ann

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Host-Specific Evolutionary and Transmission Dynamics Shape the Functional Diversification of Staphylococcus epidermidis in Human Skin von Zhou, Wei, Spoto, Michelle, Hardy, Rachel, Guan, Changhui, Fleming, Elizabeth, Larson, Peter J., Brown, Joseph S., Oh, Julia

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Analyzing Contentious Relationships and Outlier Genes in Phylogenomics von Walker, Joseph F., Brown, Joseph W., Smith, Stephen A.

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BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees von Rabosky, Daniel L., Grundler, Michael, Anderson, Carlos, Title, Pascal, Shi, Jeff J., Brown, Joseph W., Huang, Huateng, Larson, Joanna G., Kembel, Steven

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Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications von Tank, David C., Eastman, Jonathan M., Pennell, Matthew W., Soltis, Pamela S., Soltis, Douglas E., Hinchliff, Cody E., Brown, Joseph W., Sessa, Emily B., Harmon, Luke J.

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Phylogenetic Conflicts, Combinability, and Deep Phylogenomics in Plants von Smith, Stephen A., Walker-Hale, Nathanael, Walker, Joseph F., Brown, Joseph W.

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rotl: an R package to interact with the Open Tree of Life data von Michonneau, François, Brown, Joseph W., Winter, David J., Fitzjohn, Richard

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Charting the Complexity of the Marine Microbiome through Single-Cell Genomics von Pachiadaki, Maria G., Brown, Julia M., Brown, Joseph, Bezuidt, Oliver, Berube, Paul M., Biller, Steven J., Poulton, Nicole J., Burkart, Michael D., La Clair, James J., Chisholm, Sallie W., Stepanauskas, Ramunas

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Galleria mellonella Infection Model Identifies Both High and Low Lethality of Clostridium perfringens Toxigenic Strains and Their Response to Antimicrobials von Kay, Sammy, Edwards, Joseph, Brown, Joseph, Dixon, Ronald

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